Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01467 ATGAAGATCTCAATATCAGCCTGCGCCTGCAAGCAAGAGCTGCCCCTAGTAAGTTTCCAAAAGGGGCTAACGATGGAGTCGTTGTTTCATCATCGGAGTAAGGACAAGGTGATAATCATAATGGGAGCCACGGGTACCGGCAAGACGAAGTTGGCCGTAGACGTGGCAAAACACTTCCAACCAGCGGAGATAGTGAACTCCGACAAAATGCAAGTGTACAAGGGCCTCGACATCACCACGAACAAGGTCACTGAAGAAGAGTGTGGCGGGGTCCCACATCACCTGCTTGGCACTGTTGACCCTAATATAAATTTCACCGCCAGCGACTTCTGTCGCCACGCCACATCCGCAATTGATTCCATTGTGGAAAGGAATGGCTTACCCATCATTGCTGGAGGCTCCAATTCTTACTTGGACGCACTCGTGAATCACCACGCAGAGTTTCGGTTAAGGTACAAGTGTTGTTTCCTCTGGGTTGACGTCTCTCTCCCCGTGCTCCATTCCTCTCTTCAGGCACGTGTAGACCGCATGATCGACGCTGGTCAAGTGAACGAGGTTCGCGAATTCTTCGATCCTCGCGCCGATTACACCCGAGGGATCCGAAGGGCCATTGGGGTGCCCGAATTCGACGACTTCCTACGCGCTGAAGCTTCTGGAACCGAGGACGAGACAACCAGAAAGAGACTTCTGGAGGCTGCCATTGCCAGGATCAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAAAAGATTCACCGCCTCCACGGGTTGTGGAAACGGAACATGCACCGCCTCGACGCCACAGAGGTTTTCCTCGGCTCTCGCGACGCCTGGCACGACCACGTGCTCGCCAAGAGCCTGGTCATCCTTCACAAGTTCCTTTTCGAGGAAAAGAAAACGCACGTCCCCGCCGGAATCGTGTCCCCGAAAGACGTAATTGCAGCTGTTTCTGCGCCGTCGGTAGCAATGGCAGCAACCCATTAG 987 0.538 MKISISACACKQELPLVSFQKGLTMESLFHHRSKDKVIIIMGATGTGKTKLAVDVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECGGVPHHLLGTVDPNINFTASDFCRHATSAIDSIVERNGLPIIAGGSNSYLDALVNHHAEFRLRYKCCFLWVDVSLPVLHSSLQARVDRMIDAGQVNEVREFFDPRADYTRGIRRAIGVPEFDDFLRAEASGTEDETTRKRLLEAAIARIKINNCTLANRQIQKIHRLHGLWKRNMHRLDATEVFLGSRDAWHDHVLAKSLVILHKFLFEEKKTHVPAGIVSPKDVIAAVSAPSVAMAATH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01467 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
Vian6g01467 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 223 IPR027417 -
Vian6g01467 328 Pfam IPP transferase 71 145 - -
Vian6g01467 328 Pfam IPP transferase 149 250 - -
Vian6g01467 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 263 - -
Vian6g01467 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 294 IPR039657 -
Vian6g01467 328 Gene3D - 34 295 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01467 Vian-Chr6 32295702 32296688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01467 151 301 C2H2 Transcription Factor Family AT2G27760 33.898 4.06e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01467 K10760 - gmx:100812928 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01467 6 32295702 32296688 Vian6g01467 6 32295702 32296688 ECH
Vian1g00173 1 1534884 1535867 Vian6g01467 6 32295702 32296688 PCT