Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian6g01461 | ATGAAAAGTAAAAAGGGAAAGTGGAAAACTATAGAAATCCGTGGAAAGAACAAAGAACACAAAAGGTTGGTTCAACATAATTTCCCGCACAACACGCGTTCGTTCCATTGGGAGCTCTGTTTCATCATCATCATCTCACTGCTTCTGATTCTGAATTCAACCACTCTCATGGGTATCTCATGGAGTAGCAGAAGAAGAAACAATTACATCCAAAACACACCGCCTCCACTCCCACCTCCCCTTTACTATTACCGTCCCCAATTCAACCACCCTCCTCCTCCGCTGCCACCGCAGGGCTACTTTCAACCTTCCACAACCACTTACTCCCCCCACAACAACAACAACTATGCTGCTCCCCCTCCCTTGGTTCCACCGCCACAGACGCCACAGCCGCCACCGCCGCCGCAGACTCATTCCATCTCCTTCTATCACCCCAACCAGAGTGCCTATACCAACTACGCCAATTCCGCGCCCAATCGCCATCACTACCCACCTTCATACCACTCTCAGCCTACCCTGTGGCCGGCCGCCACTCGCGCCTCTGCCTCCACTCCTCCACCCTATGTCGATCACCAGACTGCGAAGAAGATACGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTCCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCATTTCAGCCAGTCACAATACCCTTTCAGAAAGGAGCCGGCCAGACATTTTCCCAGCCTTCGGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTGGAGAAGATGTGTTTCCTCTAGTAATATGTGCCGAAACAAGTTTGAAAACACCCTCGGAAGATGAAACTCCGGGTGATTCTGTTGTAGATACATCACCTCACATGCAAATAACTCAAGGTGTCTTGGAGAAAAGTAATGGTGCTGGTTCTTTCCATATAAAAGTGGTAAGGCAGATTTTGTGGATTGATGGTGTTAGATATGAGTTGAGAGAGTTATATGGAATAGCAAGCTCACCTGCAGCTGATTTTGACGACAATGATCCCGGGAAGGTGTGTGTCATATGCATCACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGACTGTGCAAATAATTTGCGACTTCGATCCAATAATTGCCCTATATGCCGTCAGCCTATCGAGGAACTTATACAGATCCAAGTAAACAATGACAATCAATGA | 1326 | 0.4706 | MKSKKGKWKTIEIRGKNKEHKRLVQHNFPHNTRSFHWELCFIIIISLLLILNSTTLMGISWSSRRRNNYIQNTPPPLPPPLYYYRPQFNHPPPPLPPQGYFQPSTTTYSPHNNNNYAAPPPLVPPPQTPQPPPPPQTHSISFYHPNQSAYTNYANSAPNRHHYPPSYHSQPTLWPAATRASASTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVSYFAKEEEKCRFVPLFPDAFQPVTIPFQKGAGQTFSQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETSLKTPSEDETPGDSVVDTSPHMQITQGVLEKSNGAGSFHIKVVRQILWIDGVRYELRELYGIASSPAADFDDNDPGKVCVICITEPKDTAVLPCRHMCMCGDCANNLRLRSNNCPICRQPIEELIQIQVNNDNQ | 441 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian6g01461 | 441 | MobiDBLite | consensus disorder prediction | 117 | 139 | - | - | |
Vian6g01461 | 441 | MobiDBLite | consensus disorder prediction | 101 | 116 | - | - | |
Vian6g01461 | 441 | ProSiteProfiles | Zinc finger RING-type profile. | 386 | 425 | IPR001841 | - | |
Vian6g01461 | 441 | Pfam | Zinc finger, C3HC4 type (RING finger) | 385 | 430 | - | - | |
Vian6g01461 | 441 | CDD | mRING-HC-C3HC5_MGRN1-like | 386 | 425 | IPR045195 | - | |
Vian6g01461 | 441 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 370 | 435 | - | - | |
Vian6g01461 | 441 | MobiDBLite | consensus disorder prediction | 93 | 143 | - | - | |
Vian6g01461 | 441 | SUPERFAMILY | RING/U-box | 379 | 433 | - | - | |
Vian6g01461 | 441 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 372 | 436 | IPR013083 | - | |
Vian6g01461 | 441 | SMART | ring_2 | 386 | 424 | IPR001841 | - | |
Vian6g01461 | 441 | FunFam | Baculoviral IAP repeat containing 7 | 395 | 434 | - | - | |
Vian6g01461 | 441 | PANTHER | MAHOGUNIN | 101 | 436 | IPR045194 | GO:0061630 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian6g01461 | Vian-Chr6 | 32228868 | 32232465 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian6g01461 | 102 | 441 | C3H Transcription Factor Family | AT3G06140 | 48.148 | 3.71e-99 | 299 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian6g01461 | - | - | vra:106775674 | 789.645 |