Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01461 ATGAAAAGTAAAAAGGGAAAGTGGAAAACTATAGAAATCCGTGGAAAGAACAAAGAACACAAAAGGTTGGTTCAACATAATTTCCCGCACAACACGCGTTCGTTCCATTGGGAGCTCTGTTTCATCATCATCATCTCACTGCTTCTGATTCTGAATTCAACCACTCTCATGGGTATCTCATGGAGTAGCAGAAGAAGAAACAATTACATCCAAAACACACCGCCTCCACTCCCACCTCCCCTTTACTATTACCGTCCCCAATTCAACCACCCTCCTCCTCCGCTGCCACCGCAGGGCTACTTTCAACCTTCCACAACCACTTACTCCCCCCACAACAACAACAACTATGCTGCTCCCCCTCCCTTGGTTCCACCGCCACAGACGCCACAGCCGCCACCGCCGCCGCAGACTCATTCCATCTCCTTCTATCACCCCAACCAGAGTGCCTATACCAACTACGCCAATTCCGCGCCCAATCGCCATCACTACCCACCTTCATACCACTCTCAGCCTACCCTGTGGCCGGCCGCCACTCGCGCCTCTGCCTCCACTCCTCCACCCTATGTCGATCACCAGACTGCGAAGAAGATACGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTCCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCATTTCAGCCAGTCACAATACCCTTTCAGAAAGGAGCCGGCCAGACATTTTCCCAGCCTTCGGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTGGAGAAGATGTGTTTCCTCTAGTAATATGTGCCGAAACAAGTTTGAAAACACCCTCGGAAGATGAAACTCCGGGTGATTCTGTTGTAGATACATCACCTCACATGCAAATAACTCAAGGTGTCTTGGAGAAAAGTAATGGTGCTGGTTCTTTCCATATAAAAGTGGTAAGGCAGATTTTGTGGATTGATGGTGTTAGATATGAGTTGAGAGAGTTATATGGAATAGCAAGCTCACCTGCAGCTGATTTTGACGACAATGATCCCGGGAAGGTGTGTGTCATATGCATCACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGACTGTGCAAATAATTTGCGACTTCGATCCAATAATTGCCCTATATGCCGTCAGCCTATCGAGGAACTTATACAGATCCAAGTAAACAATGACAATCAATGA 1326 0.4706 MKSKKGKWKTIEIRGKNKEHKRLVQHNFPHNTRSFHWELCFIIIISLLLILNSTTLMGISWSSRRRNNYIQNTPPPLPPPLYYYRPQFNHPPPPLPPQGYFQPSTTTYSPHNNNNYAAPPPLVPPPQTPQPPPPPQTHSISFYHPNQSAYTNYANSAPNRHHYPPSYHSQPTLWPAATRASASTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVSYFAKEEEKCRFVPLFPDAFQPVTIPFQKGAGQTFSQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETSLKTPSEDETPGDSVVDTSPHMQITQGVLEKSNGAGSFHIKVVRQILWIDGVRYELRELYGIASSPAADFDDNDPGKVCVICITEPKDTAVLPCRHMCMCGDCANNLRLRSNNCPICRQPIEELIQIQVNNDNQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01461 441 MobiDBLite consensus disorder prediction 117 139 - -
Vian6g01461 441 MobiDBLite consensus disorder prediction 101 116 - -
Vian6g01461 441 ProSiteProfiles Zinc finger RING-type profile. 386 425 IPR001841 -
Vian6g01461 441 Pfam Zinc finger, C3HC4 type (RING finger) 385 430 - -
Vian6g01461 441 CDD mRING-HC-C3HC5_MGRN1-like 386 425 IPR045195 -
Vian6g01461 441 FunFam probable E3 ubiquitin-protein ligase LOG2 370 435 - -
Vian6g01461 441 MobiDBLite consensus disorder prediction 93 143 - -
Vian6g01461 441 SUPERFAMILY RING/U-box 379 433 - -
Vian6g01461 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 436 IPR013083 -
Vian6g01461 441 SMART ring_2 386 424 IPR001841 -
Vian6g01461 441 FunFam Baculoviral IAP repeat containing 7 395 434 - -
Vian6g01461 441 PANTHER MAHOGUNIN 101 436 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01461 Vian-Chr6 32228868 32232465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01461 102 441 C3H Transcription Factor Family AT3G06140 48.148 3.71e-99 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01461 - - vra:106775674 789.645