Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01454 ATGGATCAAAACCAGCGACGTGAAGCAGGAAAAAGAATTAGTGGAGCTCCAGCACAAGCAGATGGAGGCAAGAAACAGGCAGTTGGTGTTCCTGTAGCTTCACCCTATGCTGGAGGGTATCGCTATGATCGGCAATGCATATACCAGCGGCAGCAAGAACAGTTGCAGCAACGGGTAAAAACCTTCTGGGAAAGACAGATGAAGGAAATTAAAGAGAGCAGTGATTTGAAGAACAACTTGCCTCTGTCGAGGATTAAGAAGATCATGAAGTTTGATGAAGATGTGAAGATGGTATCAAGTGAGGCTACTATGCTGTTAGGCAAGGCTTGTGAACTGTTCATAATGGAGCTCACAATGAGATCTTGGGCTCACGTGGAGGATGACAAAAGGAAGATAATTCAGAAGACTGATGTTGCATCTGCAATCTCAATGAATGATATGTTTGATTTTCTTGTTGATGTTGTTCCCAGGGATGACACTGTCCCAGTCATGGCGGGACAGCAGGTGCTTCCGGCGCCAAATCAGAATGCTCCTTACCCTTATATGTCACTTCCACCACCACCACCACCACCACCACCGTATGCTGCTCCGACAACTGCTCCTGGGAATGCTTCTTCTTCATCCGCTGCAAATCCATTCTATTTCAACTTCAATCCCACCCCAGATGAACAAGGCCCTTCCAATTCCAATCATCATTGA 699 0.4621 MDQNQRREAGKRISGAPAQADGGKKQAVGVPVASPYAGGYRYDRQCIYQRQQEQLQQRVKTFWERQMKEIKESSDLKNNLPLSRIKKIMKFDEDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDKRKIIQKTDVASAISMNDMFDFLVDVVPRDDTVPVMAGQQVLPAPNQNAPYPYMSLPPPPPPPPPYAAPTTAPGNASSSSAANPFYFNFNPTPDEQGPSNSNHH 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01454 232 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 79 142 IPR003958 -
Vian6g01454 232 MobiDBLite consensus disorder prediction 178 198 - -
Vian6g01454 232 MobiDBLite consensus disorder prediction 199 232 - -
Vian6g01454 232 SUPERFAMILY Histone-fold 52 151 IPR009072 GO:0046982
Vian6g01454 232 MobiDBLite consensus disorder prediction 1 27 - -
Vian6g01454 232 FunFam Nuclear transcription factor Y subunit gamma 47 157 - -
Vian6g01454 232 Gene3D Histone, subunit A 42 157 IPR009072 GO:0046982
Vian6g01454 232 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 38 177 - -
Vian6g01454 232 MobiDBLite consensus disorder prediction 169 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01454 Vian-Chr6 32103428 32104126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01454 61 228 CCAAT-HAP5 Transcription Factor Family AT1G54830 44.886 9.31e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vian6g01454 CBFD_NFYB_HMF 5.6e-16 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01454 6 32103428 32104126 Vian6g01454 6 32103428 32104126 ECH