Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01448 ATGTCTCGTTTTGAATTCCAGGTTACTAGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAGTGGTCACAAAGAAGCCAAGAATGCCCAATTTGTTGGCAATCCCTTGCTTTGAAAGATCCTGCCAGCCAAGAGCTTCTAGCTGCAGTTGAAGATGAAAAACGCTTGAGATCAAGAAAGACCACTGCTTTTCGTACCCGCCTTGAACAGTATGCCTATGAGGATGACTTGTTCTCAGACGACTCTGATTCTGATGACCAGATTATGAGGCGCCTAGTTGCTGCTGCAAATAGAGCCCGTCTTGTTCAGAGACAGGAAAGGAATAGATCACCTGGTGCTGGTCCATCAGATGTTCTTGATATTAACTCTTCCATACATGTATCTGAGTTGCAAACAACACTAACAACTTCACCATCTCCGGGTAGTTTGCCTGCCTCGGGAGTAACATCTACACTTAATAGTCAACCTCCGGTATCAAACACTACACCCGAAAGAGCAAGCCGACCAAACACTTATGAGATGTTTTCCTTCTCAGAATCCTTCAAATCCAAATTTTCTGCTGCTTCAACCAGATATAAGGAATCAATTTCAAAAGGTACACGGGGCCTCAAAGAGAAGTTACTTGCCCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGAGTTGCACGGATGATTGAACGCCTTGATCTTTCAAAACGGTCCAATTCTCCTATCATTCCAATCCATAGTGAGGGAACTTCAGACTACCCAAAGGAAGGGAAGAAGTATGTTGGAGAGAATGGCACTGGGGGTTCTCCAAGTAAAGAGAGTGAAGGTGCAGTTCATGATGTTAGTTCAGATGTCCCCATTGTCACTGGCGTGTAA 900 0.44 MSRFEFQVTSCKHEYHLHCILEWSQRSQECPICWQSLALKDPASQELLAAVEDEKRLRSRKTTAFRTRLEQYAYEDDLFSDDSDSDDQIMRRLVAAANRARLVQRQERNRSPGAGPSDVLDINSSIHVSELQTTLTTSPSPGSLPASGVTSTLNSQPPVSNTTPERASRPNTYEMFSFSESFKSKFSAASTRYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSKRSNSPIIPIHSEGTSDYPKEGKKYVGENGTGGSPSKESEGAVHDVSSDVPIVTGV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01448 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 107 IPR013083 -
Vian6g01448 299 Pfam RING-H2 zinc finger domain 8 33 IPR024766 GO:0008270
Vian6g01448 299 SUPERFAMILY RING/U-box 7 40 - -
Vian6g01448 299 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 42 - -
Vian6g01448 299 MobiDBLite consensus disorder prediction 131 170 - -
Vian6g01448 299 MobiDBLite consensus disorder prediction 248 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01448 Vian-Chr6 32040094 32041487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01448 9 41 C3H Transcription Factor Family AT4G00335 51.515 3.01e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01448 K19043 - gmx:100805449 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01448 6 32040094 32041487 Vian6g01448 6 32040094 32041487 ECH