Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01447 ATGATCTCCTTAACGAAATGCTCAGCGTCATCGCTCACCTGTTCTTCTTTCTCAACCAGAAAACTTCCCCCAGCAAAGCCTCAAGTTCTCACATTACCAGCCATTAACAACGTTGAACAAAGCACGAGTCCCTCTCGGTTGTGCTCCCAGAAACCGCTCTACCTTTCATCCACAGAAAGCTTGGCATTGGTGAAGAGAAAGAGGGTGACGGAGTGCCAGGCCTATGAGGCTGACAGGTCACGCCCCATAGAGATTAACATTGAGCTGCCGGGTGAAGATGCTGCTCAGAGGGCGAAGATTGGGATGTATTTTGCCACATGGTGGGCTTTGAATGTGGTGTTCAACATCTACAATAAGAAGGTTTTGAATGCTTTTCCTTACCCCTGGCTCACCTCCACTCTCTCCCTTGCTGCCGGCTCCCTCATGATGTTAATCTCCTGGGCCACCAGAGTTGCTGAAGTCCCCAAAGTTAACTTTGATTTCTGGAAGGCCTTGTTTCCTGTTGCGGTGGCACACACAATTGGGCATGTGGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTCTCTTTCACTCACATCATCAAGAGTGGAGAGCCTGCTTTCAGTGTCCTGGTGTCAAGGTTCTTGCTTGGGGAAGCATTCCCAATGCCGGTCTATCTGTCACTGTTGCCAATCATTGGTGGTTGTGCGCTAGCTGCTGTGACTGAACTCAATTTCAATATGATTGGCTTCATGGGGGCTATGATATCCAATTTGGCATTTGTCTTCAGGAATATATTCTCAAAGAAAGGAATGAAGGGGATGTCTGTTAGTGGAATGAACTACTATGCCTGTCTTTCCATAATGTCTCTGTTGATCCTCACACCTTTTGCCATTGCTGTGGAAGGCCCCAAGGTTTGGGCTGCAGGCTGGCAATCAGCTGTGTCTCAGATTGGTCCAAATTTTGTATGGTGGGTAGCTGCTCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCTTACATGTCTCTCGATCAGATTTCTCCCTTGACATTCAGCATTGGAAACACAATGAAGAGGATTTCGGTCATTGTCTCTTCTATTCTTATCTTTCACACCCCTGTTCAGCCCATCAATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGGTGCATTAA 1173 0.474 MISLTKCSASSLTCSSFSTRKLPPAKPQVLTLPAINNVEQSTSPSRLCSQKPLYLSSTESLALVKRKRVTECQAYEADRSRPIEINIELPGEDAAQRAKIGMYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRVAEVPKVNFDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPMPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSIMSLLILTPFAIAVEGPKVWAAGWQSAVSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPVQPINALGAAIAILGTFLYSQVH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01447 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 141 234 - -
Vian6g01447 390 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 99 389 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vian6g01447 390 PANTHER SOLUTE CARRIER FAMILY 35 99 389 - -
Vian6g01447 390 Pfam Triose-phosphate Transporter family 99 387 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01447 Vian-Chr6 32028801 32030605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01447 13 390 Antiporters AT1G61800 78.100 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01447 K15283 K05350 gmx:100804205 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01447 6 32028801 32030605 Vian7g01229 7 20492557 20495858 ECH
Vian6g01447 6 32028801 32030605 Vian6g01447 6 32028801 32030605 ECH