Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01410 ATGGACTGGACTCGAGGCCACATGCTCGGCCGTGGTTCCACCGCGGCCGTCTACATCGCCGAGTCCCGCCGATCCGGTCGAGTCTTTGCCGTCAAGTCTGCAGAGCTACACCGGTCGGAATTCCTCCAAAGGGAGGAGATGATTCTTTCCACTCTCAGGTGTCCTCATATTGTTGCGTACCAAGGTTTTGACACCACGTTTGAGAACGGTGTTTACTGGTTCAACATGTTCATGGAATACGCGCCTCATGGGACGCTGGCGGAGCGCGGTGGTGGCATGGAAGAAGCGTTGGTGGGATCCTATACCCGCCAAATTCTGCAGGGGCTGCACTACCTCCACTCCAGTGGGATAGTGCATTGCGATGTGAAGGGGCAGAATGTGTTGGTGACGGAGAAGGGGGTGAAAATTGCGGACTTGGGCTGTGCTCGGAGGGTGGGGGAGGTGTCCGTCATCGCCGGCACGCCGGCGTTCATGTCTCCTGAGGTAGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCTCTGGGGTGCACAGTGCTGGAGATGATCACCGGGAAGCCACCATGGCACGGCGTCGGCGACCCGGCGGGAGTGGTTTACAGGATCGGATTCTCCGATGAGTTGCCTGAGATTCCTAGCTGTGTGTCAGAGCAGGGGAGGGACTTTTTGGTAAAGTGTTTGAAGAGGGACCCGAATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAATGCACGGAATTGAAGTTGCTTTTGTTGGATTCAGACACTCCCACTGGTGTGTTGGAACGAGGATTTTGGGATTCCTTGGAGACAACCGAGCATGGAGCACGTGATTGTCCCTCTCCTACGGACAGAATTCGTAGTTTGTTTTCGGATGAACCCCTTTGGATATGGAAAAACGATGATGATAATGATGATGAGCAATGGGTGACGGTGAGGAGCAATGAGTTCCATGAAGAATTATCCTTTCACAAAACAGAGACTACTTTTAATATGGTTAGTGATGAGGAAACCGGATTGGTTACTTTATGTGAACCTAAAATTGTAGTTGAATTGAGTAGATGGAATGCTATCACTTGTGATGATTGTTATCTTAGAGGCAGAAACTGTGATTGTCGCTTCAGAGAATCATTATTGTCAGTTTTGCCCACAACTTTCACCGCTAAACGAAAAGTATTGTTGTGGCCTGTTGTAAAATACAATGAAACTCTCCATTAA 1239 0.5109 MDWTRGHMLGRGSTAAVYIAESRRSGRVFAVKSAELHRSEFLQREEMILSTLRCPHIVAYQGFDTTFENGVYWFNMFMEYAPHGTLAERGGGMEEALVGSYTRQILQGLHYLHSSGIVHCDVKGQNVLVTEKGVKIADLGCARRVGEVSVIAGTPAFMSPEVARGEQQGFPADVWALGCTVLEMITGKPPWHGVGDPAGVVYRIGFSDELPEIPSCVSEQGRDFLVKCLKRDPNERWSVEELLGHGFVKECTELKLLLLDSDTPTGVLERGFWDSLETTEHGARDCPSPTDRIRSLFSDEPLWIWKNDDDNDDEQWVTVRSNEFHEELSFHKTETTFNMVSDEETGLVTLCEPKIVVELSRWNAITCDDCYLRGRNCDCRFRESLLSVLPTTFTAKRKVLLWPVVKYNETLH 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01410 412 SUPERFAMILY Protein kinase-like (PK-like) 2 276 IPR011009 -
Vian6g01410 412 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 335 - -
Vian6g01410 412 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01410 412 Gene3D Transferase(Phosphotransferase) domain 1 2 276 - -
Vian6g01410 412 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vian6g01410 412 CDD STKc_MAPKKK 2 248 - -
Vian6g01410 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vian6g01410 412 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01410 412 Pfam Protein kinase domain 5 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01410 Vian-Chr6 31646099 31647911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01410 1 276 MAP Kinase Kinase Kinase AT2G32510 53.793 1.52e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian6g01410 Pkinase 5.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01410 K20716 - gmx:100802174 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00665 11 6950448 6951635 Vian6g01410 6 31646099 31647911 ECH
Vian5g00947 5 30705439 30706506 Vian6g01410 6 31646099 31647911 ECH
Vian6g01410 6 31646099 31647911 Vian6g01410 6 31646099 31647911 ECH