Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01407 ATGGACAAAGGATGGGGACTCACCCTTGACACCTCTTCCTCGCAATCTCTCTCATTATTCCCTTCCAAACAGCCTTCCACTTCTTTCTCCAAACTCACCAGCGACACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGCCCCGCTGCCAAGGACGACGAACACAACCGCAAAGTCGTCGGTGAAGTCGACTTCTTCTCTGATAGAATCACCAAACCAACCTCCCCACCCTCCCACGACCAACACGTTAAACCCAACATCGTCAAGAAGGAAATTGTTGAAACACCTCTCCACACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCGACCGTCGATGATGGGGTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGCTTGCACAGATGCAAGTGGAGCTTCAACGCATGAACGAAGAGAACAAGAAGCTGAAAGAGATGCTGAGCCATGTTACCGGTAACTACACGGCCTTGCAGATGCATCTCATGACATTAATGCATCAGAACCAGCGCACAGAGAACACAGAAAATGAGGTTGTTCAGGGAAAGGCGGATGATAAAAATCATGCTGTTGGTGGAGGAAAGGTTCCAAGACAGTTCCTTGATATAGGTCCCAGTGGCGCAGCCGAAGCAGATGACCAAGTGTCTGACTCTTCCTCCGATGAGAGAACACGATCGAGCACACCTCAGAACAATAACATTGAAGTTGGAACAAGAGACGGTGTGAGAAATGTTAATGCCAAAAGAGAGTTGGGTAGGGAAGAGAGCCCAGAGTCAGAATCCCAAGGTTGGGGTCCTAATAAGCTTCAGAAAGTTAACCCTTCCAGTGCTATCGATCAGTCCACTACAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCTCGATCAGAAGCTCCCATGATAAGCGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGGAACCCATGTCCTCGAGCATATTATAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACGATTTTGGTTACAACTTATGAAGGTACACATAACCATCCACTGCCACCTGCCGCTATGGCCATGGCGTCAACCACTACAGCTGCTGCTAGCATGTTACTGTCAGGGTCAATGTCCAGTGCAGATGGAATTATGAACCCCAATTTGCTAGCTAGAGCAATCATTCCTTGCAATTCTAGCATGGCAACACTATCAGCTTCAGCACCATTTCCAACTGTGACTTTGGACCTCACACATAACCCGAACCCGTTGCAATTTCAGAGACCAGCTACCCCATTCCAAGTGCCCTTCCTTCAAGGGCAGCCTCAGAACTTTGGATCCGGAGCCACCCCGATTGCACAAGCACAAGCACTTTATAATCAATCAAAATTCTCTGGTCTTCAACTATCTCAGGAAGTAGGTTCTTCCCAGTTGGCTGCACAAGCTTCTAGACCACCCTTACAGTCTAGCCAGCAACCCTCGCCGGCTGATACAGTCAGTGCTGCCGCGGCCGCTATCACCTCCAATCCAAACTTCACCGCCGTCCTCGCCGCCGCAATCTCCTCTATCATAGGCGGTGCTCATGATGCAAACAATAACACCAATAACAACAACAGCACAAGCAGGACTACCATCAGCAGCTTTTCAGGAAACTGA 1704 0.4918 MDKGWGLTLDTSSSQSLSLFPSKQPSTSFSKLTSDTMFPLLGFPVNLSRPAAKDDEHNRKVVGEVDFFSDRITKPTSPPSHDQHVKPNIVKKEIVETPLHTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQMQVELQRMNEENKKLKEMLSHVTGNYTALQMHLMTLMHQNQRTENTENEVVQGKADDKNHAVGGGKVPRQFLDIGPSGAAEADDQVSDSSSDERTRSSTPQNNNIEVGTRDGVRNVNAKRELGREESPESESQGWGPNKLQKVNPSSAIDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAIIPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRPATPFQVPFLQGQPQNFGSGATPIAQAQALYNQSKFSGLQLSQEVGSSQLAAQASRPPLQSSQQPSPADTVSAAAAAITSNPNFTAVLAAAISSIIGGAHDANNNTNNNNSTSRTTISSFSGN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01407 567 Coils Coil 128 162 - -
Vian6g01407 567 MobiDBLite consensus disorder prediction 229 247 - -
Vian6g01407 567 MobiDBLite consensus disorder prediction 545 567 - -
Vian6g01407 567 Pfam WRKY DNA -binding domain 313 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01407 567 Gene3D WRKY domain 296 373 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g01407 567 ProSiteProfiles WRKY domain profile. 306 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01407 567 MobiDBLite consensus disorder prediction 268 296 - -
Vian6g01407 567 FunFam probable WRKY transcription factor 31 296 373 - -
Vian6g01407 567 SMART WRKY_cls 311 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01407 567 MobiDBLite consensus disorder prediction 250 265 - -
Vian6g01407 567 SUPERFAMILY WRKY DNA-binding domain 304 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g01407 567 MobiDBLite consensus disorder prediction 492 512 - -
Vian6g01407 567 MobiDBLite consensus disorder prediction 194 305 - -
Vian6g01407 567 MobiDBLite consensus disorder prediction 1 25 - -
Vian6g01407 567 MobiDBLite consensus disorder prediction 110 130 - -
Vian6g01407 567 MobiDBLite consensus disorder prediction 7 25 - -
Vian6g01407 567 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 107 555 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01407 Vian-Chr6 31615687 31618035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01407 1 554 WRKY Transcription Factor Family AT1G62300 51.082 3.50e-159 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian6g01407 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01407 - - pvu:PHAVU_006G147800g 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01407 6 31615687 31618035 Vian6g01407 6 31615687 31618035 ECH
Vian11g00663 11 6927252 6929912 Vian6g01407 6 31615687 31618035 ECH
Vian5g00948 5 30736068 30738553 Vian6g01407 6 31615687 31618035 ECH