Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01405 ATGGCCACTTTAACCATTCTCCTAATGCTCTCAGCATGCTCTCTACTCACTTTAGCTTCACCACTGAATAACAGAGATTCAACAAAGGAGTTCGATGCCCTCTCTCCCATTCCAAGCTATATCACCGAGAGCAGCCCTAAGAATGTTGTGATGAACACAATAGATTCATGTTGGCGAGGCAAAACGAATTGGGCTTCTAATCGCCAATCCTTGGCGGATTGTGCAATTGGCTTTGGCAAAGATGCCATAGGAGGAAAGTTTGGTGATGTATATGAAGTCACCGATCCTTCTGATGACCCTGTAGACCCAAAACCTGGCACACTTCGTTATGGTGCAATCCAAACAGAACCCCTTTGGATAACTTTCGCCAAGGACATGGTTATCTCGCTGAAGAATGAGCTCATGGTGAATAGCTACAAAAGCATTGACGGGAGAGGAGCCAAAGTGGAGATTGCAAACGGGGCTTGCATTACTATACAAGGTGTTAGCCATGTAATCATACATGGAATCAGCATTCATGATTGTAAGCCTGGTGATGGTGGCATGGTTAGGAGCACTCCTGAGCATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATCAGCATATTTGCCTCCTCCAATGTGTGGATTGACCATTGCTTTTTGGCTCGTTGCACCGATGGTCTCATTGATGTTATTCATGCCTCAACTGCAGTCACCATCTCTAACAATTACTTCACCCACCACGACAAAGTTATGCTGCTAGGACACAGCGATGAATACACAGCAGATAAAATAATGAAAGTAACAATTGCCTTCAACCGATTTGGTAGTGGTCTAATTGAGAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCCATAGGGGGGAGTTCTAACCCAACCATTCTAAGTGAAGCAAACTACTATGTAGCTCCGAATAACCCTGCTTCAAAACAGGTTACCAAAAGGGAAATGAAGGGAAAATTGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCCTAAACGGTGCTTATTTTGTTCCATCAGGCTATGGAAGTTGTGACCCAAACTATCCACCTTCTCAATCTTTTACTGCTGCACCTGCTTCATTGGTGCCTTCTATAACTCTAAACGCAGGTCCCCTAACTTGTGTTGTTGGTAAACCGTGCTAG 1197 0.4453 MATLTILLMLSACSLLTLASPLNNRDSTKEFDALSPIPSYITESSPKNVVMNTIDSCWRGKTNWASNRQSLADCAIGFGKDAIGGKFGDVYEVTDPSDDPVDPKPGTLRYGAIQTEPLWITFAKDMVISLKNELMVNSYKSIDGRGAKVEIANGACITIQGVSHVIIHGISIHDCKPGDGGMVRSTPEHVGYREGSDGDAISIFASSNVWIDHCFLARCTDGLIDVIHASTAVTISNNYFTHHDKVMLLGHSDEYTADKIMKVTIAFNRFGSGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEANYYVAPNNPASKQVTKREMKGKLKSWKWRSSKDAFLNGAYFVPSGYGSCDPNYPPSQSFTAAPASLVPSITLNAGPLTCVVGKPC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01405 398 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Vian6g01405 398 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Vian6g01405 398 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Vian6g01405 398 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Vian6g01405 398 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Vian6g01405 398 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Vian6g01405 398 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Vian6g01405 398 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Vian6g01405 398 PANTHER PECTATE LYASE 18-RELATED 48 396 IPR045032 GO:0030570
Vian6g01405 398 SMART amb_all 125 322 IPR002022 -
Vian6g01405 398 Pfam Pectate lyase 131 316 IPR002022 -
Vian6g01405 398 SUPERFAMILY Pectin lyase-like 51 389 IPR011050 -
Vian6g01405 398 Gene3D - 51 391 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01405 Vian-Chr6 31585138 31591834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01405 4 398 Polysaccharide Lyase AT4G22080 62.785 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01405 K01728 - gmx:100803229 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01405 6 31585138 31591834 Vian6g01405 6 31585138 31591834 ECH