Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01395 ATGACTACAAAACCAAAGCCACACCATCTTTTCCTTCTCTTAATTCAGTTCTTAATTTCCACAAGTGTCAAAGCTGACTGTGATTCTGGTTGCAACCTTGCTCTAGCTTCCTACTACATACCGGAGGACACCAACCTCACATTCATCAGCAATCTTTTTGGAAAGCCCACATCGGAGATTCTCAAGTACAACCCAAGCGTCAAAGACTCCAACGTCATTCACAGCCAAACGCGGATCAACGTCCCGTTCTCCTGCGACTGCTTAAACGGGCAGTTTTTGGGGCACACTTTCTCCTACCGGATCCAACACGGGGACACCTACACGCTTGTTGCGGATACCACTTTCTCCAACCTCACAACCGAGGATTGGGTGAGAAGGGTCAACAGTTACCCGTCCAGTCATATTCCCGACAACGTCAACATCAACGTCACCATCAACTGCTCCTGCGGAAACCGACACGTGTCCAAGCATTATGGGCTGTTTTTGACGTACCCGCTTCGGTTGGGTGATGACTTGCAAGGGTTTGGGGCGGAATCCGGTGTGCCGGCGGAGCTGCTGGCACGCTACAACCCCACCTCAAATTTCAGTTCTGGGAGTGGACTCGTGTTCGTGCCGGCTAAAGATGAAAATGGAAACTTTCCACCTATGAAGCTGAGATCAGGAATATCTGGTGGAGCCATTGCTGGCATATCGGTTGGAGGAGCTGCTGGGGTCTTAATGTTGGCACTTGTTCTATATGTTGGACTACACAGAAGAAGAAAAGTGGCTGAGGTATCCCTTCTCACAGTCCCAGGAGCATCTGAAGATCACTGTAGTCCACTCTATCATGGTATTGGTTTGGGAAGCAGCTTGGACAAGGCATCGGAATCTTCTGTTGTTGCTTCTCCAAGGATGACAGGGATTACAGTGGACAAGTCAGTGGAGTTCTCATATGGGGAGCTAGACAAGGCCACTGATGGCTTTAGTGTGGCTAATATAATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGGAATGAGAAAGCCGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTGCAGAACTCAAGGTTCTAACGCATGTCCATCACTTGAACCTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTCTGGTTTATGAGTATATTGAGAACGGCAATTTAAGCCAACATTTGCGAGGCTCAGGGAGGGATCCGTTAACATGGGGAGCTAGAGTTGCAGATTTCGGTCTCACAAAATTGACTGAGTATGGTAGTTCTTCATTACACACGCGTCTTGTGGGTACCTTTGGTTATATGCCTCCAGAATATGCACAATATGGCGATGTTTCCTCGAAAGTAGACGTATATGCTTTCGGAGTTGTTCTATATGAACTCATCTCAGGCAAGGAAGCTATTGTCAAGACAAACGATCCTGAGGGTGAATCAAAAGGACTGGTCGCCTTGGTTTTTGAAGAAGTTCTTGGTCTCTCAGATCCAAAAGAAGATCTTCGTCAACTTGTTGACCCTAGACTTGGTGATAACTACCCTCTTGACTCTGTATTTAAGGTGTCTCAGCTTGCGAAAGCATGTACACATGAAAACCCGCAACTTAGGCCAAGCATGAGATCAATTGTTGTTGCCTTAATGACACTTTCATCTGCAACTGAGGATTGGGATGTTGGTTCCTTCTATGAAAACCAAGCTTTAGTGCACCTTATGTCTGGAAGGTAG 1740 0.4644 MTTKPKPHHLFLLLIQFLISTSVKADCDSGCNLALASYYIPEDTNLTFISNLFGKPTSEILKYNPSVKDSNVIHSQTRINVPFSCDCLNGQFLGHTFSYRIQHGDTYTLVADTTFSNLTTEDWVRRVNSYPSSHIPDNVNINVTINCSCGNRHVSKHYGLFLTYPLRLGDDLQGFGAESGVPAELLARYNPTSNFSSGSGLVFVPAKDENGNFPPMKLRSGISGGAIAGISVGGAAGVLMLALVLYVGLHRRRKVAEVSLLTVPGASEDHCSPLYHGIGLGSSLDKASESSVVASPRMTGITVDKSVEFSYGELDKATDGFSVANIIGQGGFGSVYYAELRNEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLTWGARVADFGLTKLTEYGSSSLHTRLVGTFGYMPPEYAQYGDVSSKVDVYAFGVVLYELISGKEAIVKTNDPEGESKGLVALVFEEVLGLSDPKEDLRQLVDPRLGDNYPLDSVFKVSQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01395 579 FunFam LysM receptor kinase 2 300 391 - -
Vian6g01395 579 SUPERFAMILY Protein kinase-like (PK-like) 301 554 IPR011009 -
Vian6g01395 579 ProSiteProfiles Protein kinase domain profile. 321 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01395 579 Pfam Protein tyrosine and serine/threonine kinase 324 407 IPR001245 GO:0004672|GO:0006468
Vian6g01395 579 FunFam PTI1-like tyrosine-protein kinase 3 412 565 - -
Vian6g01395 579 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Vian6g01395 579 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 13 415 IPR044812 GO:0019199|GO:0045087
Vian6g01395 579 Gene3D Phosphorylase Kinase; domain 1 302 388 - -
Vian6g01395 579 Pfam Protein kinase domain 414 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01395 579 Gene3D Transferase(Phosphotransferase) domain 1 389 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01395 Vian-Chr6 31512705 31520387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01395 12 579 Receptor kinase-like Gene Family AT3G21630 49.677 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vian6g01395 Pkinase 1.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01395 - K13429 gmx:100802308 951.429