Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01392 ATGCCTGCCCATCCTTCCTCCCTTTCTCCCTCCCTCGCTTTCATCTTCCTTTCTCTTCTTCCTCTTTCCCTCGCCAACACTGATCCTACTGATGTGATTGTTCTTGGGGAAAAAAAAATTGATTTTGCGTCGAGGGCATTTGGTTTTGATTTTGTTTTTTGGACTCTGGGTGCAGAGGACATACGTGTTCAAGCTCTCGAGGTTATGTACAATGCGTTGAATAGTTCAACTCAGTTAACGGGTTGGAGAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAAAGGGGCTTGTTTGTGGTCGAGAAAACTAATTCATCTTTTTGTGATGCTGGCTAGTGAGCTCTCAGGATTAGGACTCGATGGGACTCTGGGGTACCTGCTTTCGGACCTTATGTCACTCAGAAAGCTTGACTTGAGTGACAACAAGATCCATGATACAATTCCCTACCAGTTGCCGCCAAATCTTACAAGCCTGAATCTTGCAAGAAACAATTTATCTGGAAATCTTCCGTATTCCTTTTCTGCTATGGGTTCTCTCAATTATTTGAATTTAAGCAATAATGCACTGTCCATGGCAGTTGGCGATGTTTTTGCTAATCTTTCAGATCTAGATATCCTGGATCTATCATTCAATAACTTCTCGGGGGATCTTCCTCCTTCATTTGGTTCACTGGCCAATCTTTCTTCCCTTTTCTTGCAGAAAAACCAGTTGACTGGTTCTCTTAGTGTTCTCGTCGGTTTGCCTTTGGATACTTTAAATGTTGCGAACAATAATTTCAGTGGATGGCTACCTCGTGAAATTACTTCCATACGTCTTTTCATATATGATGGAAATTCATTTGAGAACACTCCTGCTCCTCTTCCACCAGCAGTAACTTCTCCTCCCAGTGGATCCCGTAATCATCATCATTCTGGATCTGGCTCACATAATAAAACACAAGCCTCTGATAATGAAAATTCTGATGGTCACACGGGTTTGAAAGTGGGGGCTGTTGTCGGCATTGTGTTAGGTTCCATAGTGGTGGCTGCCATTGTGCTGCTTGCTTTTATTTTCTGCATCCAAAAGCAAAAGGGGAAGAAAAAGGGTGCAAGGAATTTTAGTGGGAGCCTTCCTCGTGGAGTTATTAATGTTACTCCTCAGATGCAAGAGCAGAGGGTAAAGAGTTCTAATGTTGTTACAGACCTGAAGCCTCGCCCAGCAGAAAATGTATCAGTTGAGAGATTACCTACTAAAAGTGGATCAGTACGGCATATGAAGTCCCCTATAACTTCAACATCGTACACCATTGCTTCTCTCCAAAGTGCTACAAATAGCTTTAGTCAAGAATTTATAATCGGTGAAGGTTCTCTAGGCCGTGTTTACAAGGCTGATTTCCCAAATGGGAAGGAAATGGCTATCAAGAAGATCGACAACTCTGCACTGTCATTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCGCGCCTGCGGCACCCGAACATTGTGACATTGACTGGATATTGTGCTGAACATGGCCAACGACTTCTAGTTTATGAGTATATAGGAAATGGAAATCTGCATGACATGCTCCATTTTGCTGAAGAAAACAGTGGCAAGGCTTTGTCTTGGAATTCTCGTGTTCGCATAGCACTTGGCACAGCCCGGGCATTAGAGTACTTGCATGAAGTGTGTTTGCCCTCTGTTGTGCATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTAAATCCTCACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACAGAGCGGCAGGTATCGACTCAGATGGTCGGTTCATTTGGTTACAGTGCTCCTGATTCACGAATTCGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCATGATATAGATGCCTTGGCAAAAATGGTGGATCCTACTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCGGAACCTGAATTTCGACCTCCAATGTCTGAGGTGGTGCAAGCGTTGGTCCGACTAGTGCAAAGAGCAAGTGTGGTTAAAAGACGACCCAGTGACGAATCTGGCATTGGTCACAAGACCCCAGAACATGAGGCCATTGACATGTCATTTTAA 2154 0.4392 MPAHPSSLSPSLAFIFLSLLPLSLANTDPTDVIVLGEKKIDFASRAFGFDFVFWTLGAEDIRVQALEVMYNALNSSTQLTGWRIGGGDPCGESWKGACLWSRKLIHLFVMLASELSGLGLDGTLGYLLSDLMSLRKLDLSDNKIHDTIPYQLPPNLTSLNLARNNLSGNLPYSFSAMGSLNYLNLSNNALSMAVGDVFANLSDLDILDLSFNNFSGDLPPSFGSLANLSSLFLQKNQLTGSLSVLVGLPLDTLNVANNNFSGWLPREITSIRLFIYDGNSFENTPAPLPPAVTSPPSGSRNHHHSGSGSHNKTQASDNENSDGHTGLKVGAVVGIVLGSIVVAAIVLLAFIFCIQKQKGKKKGARNFSGSLPRGVINVTPQMQEQRVKSSNVVTDLKPRPAENVSVERLPTKSGSVRHMKSPITSTSYTIASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKEMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLTGYCAEHGQRLLVYEYIGNGNLHDMLHFAEENSGKALSWNSRVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPDSRIRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGIGHKTPEHEAIDMSF 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01392 717 MobiDBLite consensus disorder prediction 295 322 - -
Vian6g01392 717 Gene3D Ribonuclease Inhibitor 61 315 IPR032675 -
Vian6g01392 717 Gene3D Transferase(Phosphotransferase) domain 1 618 701 - -
Vian6g01392 717 SUPERFAMILY Protein kinase-like (PK-like) 415 683 IPR011009 -
Vian6g01392 717 MobiDBLite consensus disorder prediction 697 717 - -
Vian6g01392 717 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 115 684 - -
Vian6g01392 717 Gene3D Transferase(Phosphotransferase) domain 1 518 617 - -
Vian6g01392 717 Pfam Protein kinase domain 443 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01392 717 ProSiteProfiles Protein kinase domain profile. 440 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01392 717 Gene3D Phosphorylase Kinase; domain 1 402 517 - -
Vian6g01392 717 SMART LRR_typ_2 225 248 IPR003591 -
Vian6g01392 717 SMART LRR_typ_2 177 200 IPR003591 -
Vian6g01392 717 SMART LRR_typ_2 131 159 IPR003591 -
Vian6g01392 717 SMART LRR_typ_2 201 224 IPR003591 -
Vian6g01392 717 MobiDBLite consensus disorder prediction 286 322 - -
Vian6g01392 717 SUPERFAMILY L domain-like 114 276 - -
Vian6g01392 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 405 517 - -
Vian6g01392 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 59 292 - -
Vian6g01392 717 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Vian6g01392 717 ProSiteProfiles Leucine-rich repeat profile. 133 154 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01392 Vian-Chr6 31474567 31480733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01392 177 717 Strubbelig Receptor Gene Family AT4G22130 63.763 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vian6g01392 Pkinase 3.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01392 - - gmx:100781455 1086.25