Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01388 ATGTGCAAGCAAGCCATGGAGGGTAGTAGTAGTTCTAATGGCACTTCTTATTTGTTGGCTTTTGGAGAAAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCATGTTGGTCATCATCCAATAAATCCTAATCCTAGTAATAATACCAATAATAATGCAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACGATGATAACAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCATCCCAACCACCGCAGCAACAACAATGGAAGCTCCTCCTCCTCCTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCCTGTGCTTCTACGGTGACAATGGCCGGAGATGCAGCTGGATCGAGCTGCATAGGTGAGGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACTAAGTACGAGCAAGAACTCTCCAAACCCATAAAAGAAGCCATGCTCTTCCTTCAAAGGGTTGAGTGTCAGCTCAAAAACCTAACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGTGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCGCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCGGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACGTCGACACTGTTATGGCCAATCCATTTCCCATGGATCTCTCCCATCCCATGCTCTAG 1128 0.4707 MCKQAMEGSSSSNGTSYLLAFGENSGGLCPMTMMPLVTSHHVGHHPINPNPSNNTNNNANTNCLFIPNCSNSGTPSIMLDNNHNNNDDNNNTGVGYYFMESGHPNHRSNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASTVTMAGDAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPIKEAMLFLQRVECQLKNLTVSSSDFGCNEGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01388 375 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Vian6g01388 375 Gene3D - 282 344 - -
Vian6g01388 375 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Vian6g01388 375 Pfam ELK domain 257 278 IPR005539 GO:0003677
Vian6g01388 375 SMART KNOX2_2 171 222 IPR005541 GO:0003677|GO:0005634
Vian6g01388 375 SMART ELK_2 257 278 IPR005539 GO:0003677
Vian6g01388 375 FunFam Homeobox protein knotted-1-like 2 282 344 - -
Vian6g01388 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 346 - -
Vian6g01388 375 CDD homeodomain 289 341 IPR001356 GO:0003677
Vian6g01388 375 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Vian6g01388 375 Pfam KNOX1 domain 121 160 IPR005540 GO:0003677|GO:0005634
Vian6g01388 375 MobiDBLite consensus disorder prediction 98 121 - -
Vian6g01388 375 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Vian6g01388 375 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Vian6g01388 375 SUPERFAMILY Homeodomain-like 279 355 IPR009057 -
Vian6g01388 375 MobiDBLite consensus disorder prediction 103 121 - -
Vian6g01388 375 Pfam KNOX2 domain 174 221 IPR005541 GO:0003677|GO:0005634
Vian6g01388 375 SMART HOX_1 279 344 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01388 Vian-Chr6 31452057 31457163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01388 122 375 Homeobox Transcription Factor Family AT1G62360 79.008 2.56e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vian6g01388 KNOX2 5.3e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01388 6 31452057 31457163 Vian6g01388 6 31452057 31457163 ECH