Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01370 ATGTTTGGAATTCAACACTCGGGAGGAAGATTTGTCATGACTGTATGCTCTGACACTCTTCATATCATTGCTGTAAAATACACTTGTTTTCTAGGTTCAATGGCGGGGTCATGTTTCCACGGACTTAGGCTAAGGATGTCTAAGAGTAAACCTTTACCAGAGCCTTCATCTTCCTCCAAGTTAAGGTTGGAGAGTGAGACGGAGAACATGGAAAGGAAGAGATTTAATAGCACGGAATCGTGGTCCATGATATTGGACTCGATGGATACATGGGAGGCTTCAAAGGAGGACCTGGAGGGGGAGCAAGGGGAATGGACTGCAGACCTATCACAGCTTTTTATTGGTAACAGGTTTGCTTCTGGAGCTCACAGTCGAATTTACCGTGGAGTCTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAAGATGCCATCCCAGGATGAGGAGAAAAAGGAATTACTAGAGGAGCAATTTAACTCTGAAGTGGCTTTGCTTTCACGTCTCTTCCATTTTAACATTGTGCAGTTCATTGCAGCATGTAAAAAACCGCCGGTGTACTGTATCATAACAGAATACATGTCACAAGGGAATCTAAGGATGTATCTGAACAAGAAAGAGCCATACTCACTCTCAATAGAAACAATACTAAGGATGGCTCTAGATATATCAAGGGGCATGGAGTACCTTCATTCACAAGGTGTTATTCACAGAGACTTGAAGTCAAGTAATTTGCTCCTCGACGATGATTTGAGGGTTAAGGTGGCGGATTTTGGCACATCTTGTCTTGAAACAAGATGCCGAAAAAGCAAAGGGAACTCGGGAACATATCGTTGGATGGCACCAGAGATGGTTAAGGAAAAACCTTATACTCGAAAAGTTGATGTCTACAGTTTTGGTATTGTGCTTTGGGAGCTCACTACTTCTCTACTTCCTTTCCAAGGAATGACCCCGGTGCAAGCTGCTTTTGCTGTGGCCGAGAAGAATGAAAGGCCTCCTCTGCCAGCAAGTTGTGAACCAGGACTAGCACATCTGATAAAGCGTTGTTGGTCAGCAAACCCGTCGAAACGGCCAGATTTCAGTGACATTGTGTGTACGTTGGAGAAGTACGATGAGTGTATGAAGGAAGGCGTACCAATGAGCCATCATTCAGGGCTACTCAGCAGAAATGTAATTGTCGAACGCCTCAAAGGCTGTGTATCAATGACCTCCTCCATACCTGTCTATGCATGA 1230 0.4447 MFGIQHSGGRFVMTVCSDTLHIIAVKYTCFLGSMAGSCFHGLRLRMSKSKPLPEPSSSSKLRLESETENMERKRFNSTESWSMILDSMDTWEASKEDLEGEQGEWTADLSQLFIGNRFASGAHSRIYRGVYKQRAVAVKMVKMPSQDEEKKELLEEQFNSEVALLSRLFHFNIVQFIAACKKPPVYCIITEYMSQGNLRMYLNKKEPYSLSIETILRMALDISRGMEYLHSQGVIHRDLKSSNLLLDDDLRVKVADFGTSCLETRCRKSKGNSGTYRWMAPEMVKEKPYTRKVDVYSFGIVLWELTTSLLPFQGMTPVQAAFAVAEKNERPPLPASCEPGLAHLIKRCWSANPSKRPDFSDIVCTLEKYDECMKEGVPMSHHSGLLSRNVIVERLKGCVSMTSSIPVYA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01370 409 Gene3D Phosphorylase Kinase; domain 1 101 194 - -
Vian6g01370 409 SMART serkin_6 112 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01370 409 Gene3D Transferase(Phosphotransferase) domain 1 195 388 - -
Vian6g01370 409 ProSiteProfiles Protein kinase domain profile. 112 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01370 409 Pfam Protein tyrosine and serine/threonine kinase 115 365 IPR001245 GO:0004672|GO:0006468
Vian6g01370 409 MobiDBLite consensus disorder prediction 48 69 - -
Vian6g01370 409 CDD STKc_MAP3K-like 119 363 - -
Vian6g01370 409 SUPERFAMILY Protein kinase-like (PK-like) 96 366 IPR011009 -
Vian6g01370 409 FunFam Serine/threonine-protein kinase isoform 1 102 194 - -
Vian6g01370 409 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 105 369 - -
Vian6g01370 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vian6g01370 409 FunFam serine/threonine-protein kinase HT1 195 387 - -
Vian6g01370 409 PRINTS Tyrosine kinase catalytic domain signature 293 315 IPR001245 GO:0004672|GO:0006468
Vian6g01370 409 PRINTS Tyrosine kinase catalytic domain signature 228 246 IPR001245 GO:0004672|GO:0006468
Vian6g01370 409 PRINTS Tyrosine kinase catalytic domain signature 190 203 IPR001245 GO:0004672|GO:0006468
Vian6g01370 409 PRINTS Tyrosine kinase catalytic domain signature 274 284 IPR001245 GO:0004672|GO:0006468
Vian6g01370 409 PRINTS Tyrosine kinase catalytic domain signature 337 359 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01370 Vian-Chr6 31232262 31236397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01370 34 400 MAP Kinase Kinase Kinase AT1G62400 76.517 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian6g01370 PK_Tyr_Ser-Thr 2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01370 - - aprc:113845847 654.825