Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01344 ATGCAAACGTCCCAGAAACACCCAGCTTCATCCGGTTTCGATTTATACCACCAGCCTGTGCAAAACGTCGATCCCTACACTCGTTACCAAGTATTGCAAAGCAATTCTTGCCATGAAATCCATGATAGCAACAGTCAGGGAACCACTATCTCGTTTGAACCCTGCAAGGAGCAATACTTTACCCTTGAATCATCCCCAGCACTCAATGATCTCATAGGTTGTGATTCTCCTTCCTATGCCAGTGTATCGTCCAATTCCAACAGAAGTCCTTTTTCTCCGCATGCTTCTCATTCATACCATTCAGACCAGCATCAGTCATCTGACAACAACTATGGATCACCAACGAGTGCACACTCCAGTGCTGATGATAGCTATGAACTGAAGCACAAGCTCAGAGAACTTGAGATTTCACTGTTGGGGCCTGATTCAGAAATTGTTGACAGTTGTCACTGCTGCTACGAGGGTGGCCACCACGGAGCATCTCCAATGGCTAAATATAATTGGGATCAGGTTGTAGAAATGATTCCAAAACTAGACTTGAAAGAAGTCCTCAGTCGGTGTGCACAGGCTGTATCTGATGGTGATATTGAAACAGCGGTGGGATTTATGAATAATGTATTGCCAAAGATGGTATCAGTAGGGGGTGATCCAATCCAGAGGTTAGGGGCCTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAGTCTTCAGGGAGCCTAATATACAAAGCCTTGAAATGTGAACAACCAGCAAGCAAAGATCTCATGAGTTACATGCACATCTTGTACCAGATTTGTCCATATTGGAAGTTTTGTTATGTATCTGCCAATGCTGTCATTGGAGAAGCAATGCAAAATGAATCAAGAATCCACATAATTGACTTCCAAATAGCACAGGGCACTCAGTGGATGCTGCTTATTCATGCTCTTGCATCTCGTCCTGGTGGAACACCTTTCATTCGTGTAACTGGTGTCGATGATTCCGAATCCTTTCATGCAAGAGGAGGAGGACTTGACATTGTAGGAAAACGGCTCTCAGAATATGCCAAATCCTGTAGAGTTCCATTTGAGTTCCACAGTGCGGCAATGTCTGGATGCGAGGTTGAACTAGAAAACCTTGTGGTTCTACCGGGGGAAGCTCTGGCTGTGAATTTCCCTTTTGTTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCACAGGGACAGGCTATTAAGACGGGTTAAGAATTTGTCACCCAAGGTTGTGACACTCGTTGAGCAAGAATCCAACACCAACACTTCCCCCTTTTTCCAAAGGTTTGTTGAGACATTGAGTTATTACAGTGCAATGTTTGAGTCAATAGACGTGGCCCTGCCCAGAGAGGATAAGCAAAGGATCAGTGCTGAACAACACTGTGTGGCTCGTGACATTGTTAACATGATAGCTTGTGAGGGGCCTGAGAGGGTGGAAAGGCACGAACTTTTGGGGAAGTGGAGGTCAAGATTTTCAATGGCTGGTTTTGCACCATGCCCTTTGAGTTCCTCAGTCACCAATGCAGTTAGAAATATGTTAAGAGAGTTCAATGGAAATTATAGGCTAGAACATATAGATGGTGCGCTCTATTTAGGATGGAAGAGAAGAGCCCTCTGTACATCTTCTGCCTGGAGATGTTACTGA 1662 0.4501 MQTSQKHPASSGFDLYHQPVQNVDPYTRYQVLQSNSCHEIHDSNSQGTTISFEPCKEQYFTLESSPALNDLIGCDSPSYASVSSNSNRSPFSPHASHSYHSDQHQSSDNNYGSPTSAHSSADDSYELKHKLRELEISLLGPDSEIVDSCHCCYEGGHHGASPMAKYNWDQVVEMIPKLDLKEVLSRCAQAVSDGDIETAVGFMNNVLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPASKDLMSYMHILYQICPYWKFCYVSANAVIGEAMQNESRIHIIDFQIAQGTQWMLLIHALASRPGGTPFIRVTGVDDSESFHARGGGLDIVGKRLSEYAKSCRVPFEFHSAAMSGCEVELENLVVLPGEALAVNFPFVLHHMPDESVSTENHRDRLLRRVKNLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMFESIDVALPREDKQRISAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGNYRLEHIDGALYLGWKRRALCTSSAWRCY 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01344 553 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 114 545 IPR005202 -
Vian6g01344 553 MobiDBLite consensus disorder prediction 83 124 - -
Vian6g01344 553 Pfam GRAS domain family 181 551 IPR005202 -
Vian6g01344 553 ProSiteProfiles GRAS family profile. 171 551 IPR005202 -
Vian6g01344 553 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01344 Vian-Chr6 31009886 31011547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01344 1 551 GRAS Transcription Factor Family AT4G17230 58.484 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian6g01344 GRAS 2e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01344 - - gmx:100819190 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01344 6 31009886 31011547 Vian6g01344 6 31009886 31011547 ECH