Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01336 ATGTCTGGTGGGGAGGTAGGTGGTGGGGATGTTTTTGTGGCCTGGGAGGAGCAGGTGATATGCCAGGAGCGTGGGAACCGAGTGATTCACTTCTATCTGAAGGATGCGTCCGGAAATTCGGTGCTGGCGGTTGTGGGGACGGAGAGGAGTGTGAGGCACATGATGTATGTTGTCCCTGACCATTTCTTGCAGGCCTATGGATCCACACAGCCCATCAATGCCTGCAAGTGGAGGGCACGGCGAGAGGTTGTTGACTGGCTTACTTGTTTGGTCTCCAGGAATAGGTCACACCATCCAGGTGTACAATTGGATGAATTTGCACAAGTTGATGAATCTCTCAAAATTTTAGTGCCTGGAATTAATTTCAGTAATAAGATTTTACCTGATAAAATGATTTCTAGGAAACTAAAATTCCAAACCTCGGATATTGAATGGTCAGGCAGCACTTGGTTTTGTGCTAAACAGCTGAAGCACTACTCAGGGTTTTGCAGGAATGGAACAACCATAAATGTTCATTCATTTGTGTATATTATGGCTGAAGAAGAAAACCATTATCTTGGTTACTTGGAAGATATGTATGAAGACAAGAAGAGACAAAAAAAGGTGAAGGTGCGTTGGTTTCATCATGGTCAGGAAGTTAAGCAGGTGATTCCACAGCTGATTCTGCAAGAGGGAGAGGTTTTCATCACACCTCATGTTCAGGTGATCAGTGCTGAGTGTGTCAATGGTCCTGCGACTGTTTTGACTCCTAAGCATTATGAGAAATACCTGGCTGCTGTGCCTCATACGTCTTTATCCGAGATCCATACGTGCTTTAGGCAGTTTAAAAACAATAGGCTTAAGCCCTTCACACTTACAAAGTTGCGTGGGTATAGTAGCCAGCCTGTTCTTTCTTGTTTAAATAGTCCTATTCTCTCCAAGAGAAAGGCAAAGTTTGAAAAGTCACACACAGATGATGATGAGAACTTCACTCAAGATGATCCTTTAAGGTCCAGCAATAAGAGGATTAGATGTTCTAAGGATCACATATTTGGGAAGGCTTTTTCTGGTCTGCAAGTCTCTATTCCTACCAATGAAATGACAAAATGTGGACTGAAATATCCCAGTTTAAAATTAAAACTATCAAGAAAAACAGTAGGTATTAAGGTTATTGGACCAAAGCCTAAACTTCCTTTTCAGGTCGGTGCTAAGATAGAGGTTCTTTGTCAAGATAGTGGCATTAGAGGATGCTGGTTTAGATGTAAAATCTTGAGCATGTCTCCGAGGCTGCTGAAGGTCCAGTATGATGATTTGCTTGATATAGACGGAGCACAGAAACTAGAGGAATGGGTTCCTGCATCTAGAGTGGCAGCTCCTGATAAATTGGGTATGCGATGTTTAGGCCGCTTAACAGTCCGGCCATGCCCTCCTGAATACAATTCAAGTCGTACTTTTGAGATTGGAGCAGCAGTGGATGCCTGGTCGTGTGATGGATGGTGGGAAGGGGTCATAACTGCAGTTAATGTCAGCGGAGATGGAATCCTGCAAGTTTACACCCCTGGTGAAGAGAGGTTCCTAAAGGTCGAGCAGAAGAACATTCGCATTTCCCGAGATTGGATCAATAACAGATGGATTGATATACGAGGAAAGCCTGACATTTGCACTTATTTAACTTCAAATGTCAGGTCCAGCATCGGGATGTCAGCTAATTCTGCAGTGGTGGATGGATCCATGTCTGATTGCTCTGCTTTAGAAAGTAAATCATCATCAATTCCCAAAGTTGAACTTGCTAAGAAGGTTGAACCAGAATCGTCTGGTTTGGAAATCCCTGTTGATCTGGAAATTATGAAGGGAATAACTCTGAGGGAGCCACTCTATGCCATTCATGAGGACAAGGATAACTCTGGTGGTGGCTGTGATGATGAAGCTGACAAGGCTGTGAAGACACTTCTGACCTTAAATGAACACAACGCTAATAGCTCTTGTAGTGATGATGACACTGAGGATGATGATAATGTCAATGGTGATGATGTTGACAACGGGGAGGCCAGTGAGGAAAATTTTGATTGTTGTGAACCAAAACTTGATGCAGCAGAATCAATACAAGTTGCATAA 2094 0.4331 MSGGEVGGGDVFVAWEEQVICQERGNRVIHFYLKDASGNSVLAVVGTERSVRHMMYVVPDHFLQAYGSTQPINACKWRARREVVDWLTCLVSRNRSHHPGVQLDEFAQVDESLKILVPGINFSNKILPDKMISRKLKFQTSDIEWSGSTWFCAKQLKHYSGFCRNGTTINVHSFVYIMAEEENHYLGYLEDMYEDKKRQKKVKVRWFHHGQEVKQVIPQLILQEGEVFITPHVQVISAECVNGPATVLTPKHYEKYLAAVPHTSLSEIHTCFRQFKNNRLKPFTLTKLRGYSSQPVLSCLNSPILSKRKAKFEKSHTDDDENFTQDDPLRSSNKRIRCSKDHIFGKAFSGLQVSIPTNEMTKCGLKYPSLKLKLSRKTVGIKVIGPKPKLPFQVGAKIEVLCQDSGIRGCWFRCKILSMSPRLLKVQYDDLLDIDGAQKLEEWVPASRVAAPDKLGMRCLGRLTVRPCPPEYNSSRTFEIGAAVDAWSCDGWWEGVITAVNVSGDGILQVYTPGEERFLKVEQKNIRISRDWINNRWIDIRGKPDICTYLTSNVRSSIGMSANSAVVDGSMSDCSALESKSSSIPKVELAKKVEPESSGLEIPVDLEIMKGITLREPLYAIHEDKDNSGGGCDDEADKAVKTLLTLNEHNANSSCSDDDTEDDDNVNGDDVDNGEASEENFDCCEPKLDAAESIQVA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01336 697 SMART BAH_4 167 286 IPR001025 GO:0003682
Vian6g01336 697 MobiDBLite consensus disorder prediction 648 685 - -
Vian6g01336 697 Pfam BAH domain 168 261 IPR001025 GO:0003682
Vian6g01336 697 SMART agenet_At_2 476 534 IPR014002 -
Vian6g01336 697 SMART agenet_At_2 390 455 IPR014002 -
Vian6g01336 697 MobiDBLite consensus disorder prediction 657 679 - -
Vian6g01336 697 Pfam Agenet domain 395 470 IPR008395 -
Vian6g01336 697 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 390 568 - -
Vian6g01336 697 Gene3D - 134 281 IPR043151 -
Vian6g01336 697 CDD Tudor_Agenet_AtDUF_rpt1_3 392 470 - -
Vian6g01336 697 ProSiteProfiles BAH domain profile. 167 286 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01336 Vian-Chr6 30952325 30961394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01336 404 532 PHD Transcription Factor Family AT5G58610 27.820 2.94e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01336 - - vun:114188137 1306.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01336 6 30952325 30961394 Vian6g01336 6 30952325 30961394 ECH