Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01325 ATGGGCAATGTGAATGGGAGAGACGATGTCAACGGTACTCCCTCCGAGACCGAAGGAGAAGAAGAAGAAGAAGACGACGACGAAGCTGCCGCTGTTGCACCTGCTCACGGTGTCGCCGATTGCATGTCCGCCAACCCTGGCTATCGTGCGCCTTCCGATATGATGGGTCATTCTCCCCCTGCTAGCCCTAGAACCACCCAATCTCCCTTCATGTTCGCCCCACAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCATACTCCAAGCCCTTCCTGGATGCAGACTACGTCAGGGTACGAGGATATGTACAGTGAACTTGGAATTCCAACGATGATTACTTGGAGTTATGATGGGAAAGAAGTGGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGTCCTTACAGAGATCAGGGAAGGATTTCACAATAATGAAAGTGTTGCCATCCGGTGTATACCAATTTCGATTTATTGTGGATGGCCAGTGGAGGTATGCACCTGACTTGCCTTGGGCTCAAGATGATGCGGGTAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAGGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCATATTTGCAAATGACGCTTCTTAACATTCCGTCAACAAATATGGAAATCCAACCTCTTACAGCCAGACCTCAGCATGTAGTGCTCAATCATCTTTACATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTCGCACTTGGCACAACTCATCGGTTTCTAGCCAAATATGTGACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 894 0.4698 MGNVNGRDDVNGTPSETEGEEEEEDDDEAAAVAPAHGVADCMSANPGYRAPSDMMGHSPPASPRTTQSPFMFAPQVPVVPLQRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWKTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEIQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFLAKYVTVVLYKSLQR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01325 297 MobiDBLite consensus disorder prediction 15 29 - -
Vian6g01325 297 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 223 293 IPR006828 GO:0005515
Vian6g01325 297 MobiDBLite consensus disorder prediction 1 68 - -
Vian6g01325 297 Gene3D - 198 295 - -
Vian6g01325 297 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 297 IPR043554 -
Vian6g01325 297 SMART AMPKBI_2 205 295 IPR006828 GO:0005515
Vian6g01325 297 Gene3D Immunoglobulins 105 192 IPR013783 -
Vian6g01325 297 Pfam Glycogen recognition site of AMP-activated protein kinase 110 189 IPR032640 -
Vian6g01325 297 SUPERFAMILY AMPKBI-like 192 294 IPR037256 -
Vian6g01325 297 CDD E_set_AMPKbeta_like_N 111 187 - -
Vian6g01325 297 SUPERFAMILY E set domains 110 195 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01325 Vian-Chr6 30879122 30881703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01325 109 190 Protein tyrosine phosphatase (PTP) family AT3G01510 31.818 4.30e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01325 K07199 - gmx:100777497 545.814