Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01317 ATGGAGATGGAGAGGTACACCAGTCAGTGGTGGAAACCTACTGATGACCAGGTTAAAATGATGACCAATATCTTCAACCACGGGGTCACACATCCCAGCAGAGCCCAAGTTGTCGAGATTGCATCTCGAATCAGGGCCTTCGGAGAGGTCAGTGAATATAATGTACACTGCTGGTTCAACAATCATGGTAACCGGGTCAAGCGCTGGCAAGCGGAATTAGACCCCACTGGCACCGTATTTTCTCAGCTGCCGCTGTACATGTATGAATATGGCTGGGTAATTATGAAGGCGCCGAGGTTGCTGAACCTGTTCCCCGTTCCGATCATCATCGACGATGACAAGGACGAACGACAAATCCCTCAACCCATGCCTCTCGCCTTCCGAACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGGCCACCACAACCAGCTCGAGAATTTTTCCATTAA 450 0.5111 MEMERYTSQWWKPTDDQVKMMTNIFNHGVTHPSRAQVVEIASRIRAFGEVSEYNVHCWFNNHGNRVKRWQAELDPTGTVFSQLPLYMYEYGWVIMKAPRLLNLFPVPIIIDDDKDERQIPQPMPLAFRTRAPSTELSLRPPQPAREFFH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01317 149 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Vian6g01317 149 ProSiteProfiles 'Homeobox' domain profile. 14 69 IPR001356 GO:0003677
Vian6g01317 149 PANTHER WUSCHEL-RELATED HOMEOBOX 13 8 72 IPR044559 GO:0003700
Vian6g01317 149 Gene3D - 11 74 - -
Vian6g01317 149 Pfam Homeodomain 11 68 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01317 Vian-Chr6 30826653 30827195 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01317 7 72 Wox Gene Family AT5G59340 36.364 5.47e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian6g01317 Homeodomain 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01317 - K20308 vum:124821070 275.018