Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01301 ATGATTCTGAAATTGGTAATCCATTTCATCATTTTGGTAATATGGTTTATACATGTACAGGTATCTGCACAAGATTACCTACAAGTAGCAAAGCCTGGCTGTGATTCGAAGTGTGGAAATCTTCAAATTCCCTTTCCGTTTGGAATGAATACTTCAGAATGCTACTTAGGGAAATGGTTTGAAATAGAATGCAGAAACACTTCCACATATCAAACACCTTACCTCAAGTCAATAGGACTGCAAGTCACATCCATTGATGTCCAACAAGGCACGGTTACTATCAACAATTCCATTTACCGTAATAACTGCGGAACCAGAGATTCTACGCCGGTGAACCGGTCGCTGGAAGGAAGCCCTTTCGTGTATTCGCAGGAACACAACAAATTTGTGGCCGCAGGTTGCAATATCATTGCAATTTTGCAGATAAATGGGTCAGAAGGTAGCGGTTGTGTGTCCATCTGCGACCAAGACTTCAAGGTGGATGATATTGGGAAAATGGAGCTTGAAAACAGTGATTGTAATGGGAAGTCCTGCTGTCAGAATTCACTGCCACCGTATCTTAAGGAATACAGCACTGAAGTAAAAGGTTTGAAGGAGAATGAAACGGATGGTGAGTGTAGTTACGCCATGGTTGTACAGCAAGTAGGACTGTACTCTTATTATACTCGCAAAAGCTACTACTTTCCTGTGAATGGTGAGATGAAGGATGTGGATGTGGTCCCTGTGGTGCTTGAATGGGAGATTCCCAACAATTTGACGCTTAAACTTCCTCCAGATAATCTCTCCTACTGTTCTGACACTAATGTTACTTCTTCACTCTATAAACGTTCAGGTCAGAGATGTTCCTGCAAATACGGTTACAGTTACGATTCCAATCCCTATGTTGAGGGAGGTTGTTCAGACAATGACGATCATCCGTTCTACCGGAATTCGCCGAGTAACGTACCAATATCTGTCATAAAAGGAATTTCTACCAGCTTTGGATCTATCATTTTACTTCTTATTTTATGGCGGGTGTTCAAGGTTACAAAGAAAATCATAATGAAGAAATTCAGAGAAAAATTCTTCAAAAGAAATGGAGGATTGTTGTTACAACAAAAATTATCTTCTAGTGAAGTTAATATGGATAAAGTTAAACTCTTCAGCTTAAAAGAATTGGAGAAGGCCACCGATAACTTTAATTCAAACAGAGTACTTGGAAAAGGAGGTCAAGCTACTGTTTACAAAGGCATGTTGATAGATGGAACAATCGTTGCAGTGAAAAAATTTAAGGTCCAAGGAAAGATTGAAGAATTTATCAACGAATTTGTCATTCTTTCACAAATTAACCATAGGAATGTGGTTAAGTTATTAGGAAGTTGTTTGGAGACTAAAATTCCTTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTTCTTGCATTTACAAAATGAGGATATGCCATTGACATGGAACATGCGTTTGAGAATTGCCATTGAAGTTGCAGGAGCTTTATTTTACTTGCACTCTGCGGCTTCTCAACCTATTTATCATAAAGACATCAAGTCAACAAATATACTGTTGGATGAAAAGTATAGGGCGAAAGTAGCAGACTTTGGTACATCAAGAATGATTTCTATTGATGTTACACACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGATCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTGTACAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATAACCCTCCTAAGTCAAGAGGAAGCTAAAAGTTTAGCTTCGTATTTCATCATGTGTGTAGAGGAAAATTGTGTGTTTGATATTATTGATGAAAGAGTGATGAAGGAAGGGGAGAAATGTTATATCATGAAAGTTGTCAATCTTGCAAGTCGATGTTTAGAACTGAACGGAAAGAGGCGACCAACTATGAGGGAAATCACATTGGAATTAGAAGCTATTCGAAAATTGGAAAATGAGTCTAATGCACAAGGGAATGGTGAGTTTGTTAGAAGTGAAGACTATAAATCTTGGGATGATAATTCTATTATATCAGAAATAATGTCAACTATTGATCAAAGTAGCAGAACAACAATCTTGAATGATGTTCATATTGTTACCATGTGA 2157 0.3751 MILKLVIHFIILVIWFIHVQVSAQDYLQVAKPGCDSKCGNLQIPFPFGMNTSECYLGKWFEIECRNTSTYQTPYLKSIGLQVTSIDVQQGTVTINNSIYRNNCGTRDSTPVNRSLEGSPFVYSQEHNKFVAAGCNIIAILQINGSEGSGCVSICDQDFKVDDIGKMELENSDCNGKSCCQNSLPPYLKEYSTEVKGLKENETDGECSYAMVVQQVGLYSYYTRKSYYFPVNGEMKDVDVVPVVLEWEIPNNLTLKLPPDNLSYCSDTNVTSSLYKRSGQRCSCKYGYSYDSNPYVEGGCSDNDDHPFYRNSPSNVPISVIKGISTSFGSIILLLILWRVFKVTKKIIMKKFREKFFKRNGGLLLQQKLSSSEVNMDKVKLFSLKELEKATDNFNSNRVLGKGGQATVYKGMLIDGTIVAVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFEFLHLQNEDMPLTWNMRLRIAIEVAGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLLSQEEAKSLASYFIMCVEENCVFDIIDERVMKEGEKCYIMKVVNLASRCLELNGKRRPTMREITLELEAIRKLENESNAQGNGEFVRSEDYKSWDDNSIISEIMSTIDQSSRTTILNDVHIVTM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01301 718 Pfam Wall-associated receptor kinase galacturonan-binding 34 95 IPR025287 GO:0030247
Vian6g01301 718 Pfam Protein tyrosine and serine/threonine kinase 396 660 IPR001245 GO:0004672|GO:0006468
Vian6g01301 718 Gene3D Transferase(Phosphotransferase) domain 1 467 688 - -
Vian6g01301 718 Gene3D Phosphorylase Kinase; domain 1 364 466 - -
Vian6g01301 718 FunFam Wall-associated receptor kinase 2 363 466 - -
Vian6g01301 718 FunFam Wall-associated receptor kinase 2 467 683 - -
Vian6g01301 718 SUPERFAMILY Protein kinase-like (PK-like) 370 661 IPR011009 -
Vian6g01301 718 ProSiteProfiles Protein kinase domain profile. 393 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01301 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Vian6g01301 718 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 670 IPR045274 GO:0007166
Vian6g01301 718 SMART serkin_6 393 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01301 Vian-Chr6 30648187 30651154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01301 34 671 Receptor kinase-like Gene Family AT1G16130 43.668 1.11e-175 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vian6g01301 PK_Tyr_Ser-Thr 4.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01301 - - gmx:100775935 900.582