Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01300 ATGATTCTGAAATTGGTAATCCATTTCATCATTTTGGTAATATGGTTTATACATGTACAGGTATCTGCACAAGATTACCCACAAGTACTAGCAAAGCCTGGCTGTGATTCGCAGTGTGGAGATATTGCAATTCCCTTTCCGTTTGGAATGAATACTTCAGAATGCTACGCAGGGAAATGGTTTGAAATAGAATGCGGAAACACTTCCACATATCAAAAACCTTACCTCAAGTCAATAGGAGTGCAGGTGAGATTCATTGATGTCCAACAAGGTACGGTTACTGTCAACAATCCCATTGACCGTAACAACTGCGGAAGCAAAGATTCTAGGCCGGTGAACCAGTCGCTGGAAGGAAGTCCTTTCGTGTATTCGCAGGAGCACAACAAATTTGTGGCCGTAGGTTGCAATATAATTACTTTTTTGCAGGTGAATGGGTCAGAAGGCAGTGGTTGTGTGTCCATCTGCGACGAGGACTTCAAGGTGGACGATATCGGGAAAATGGAGCTTGAAAACAGTGATTGTAACGGGAAGTCCTGCTGTCAGAATTCCCTGCCACCGTATCTTAAGGAATACAGCACTGAAGTAAAAGGTTTGAAGGAGAATGAAACGAATCGTGAGTGCAGTTACGCCATGGTTGTACAAGATTATTTTAGTTTTTATTATACTCGCAAAGGCTACTACTTTCCTATCGATGGTGAGATGAAGGATGTGGATGTGGTCCCTGTGGTGCTTGAATGGGAGATTCCAAACAACTTAAACCTTAAACTTCCTCCAGATGATCTCTCCCACTGTTTTGACACTAATATTACATCTTCACGATATAATCGTTCGGGTCAGAGATGTTCCTGCACGTACGGTTCCAATCCCTATGTTGAGGGAGGTTGTTCAGACTATTATGAATCCAGCCGGAATTCGCTGAGTCACGTGACAATATCTATCATAAAAGGAGTTTCTATAAGCTTTGGATCTATCATTTTACTTCTTCTTATTTTATGGCGGGTGTTCAAGGTTATAAAAACAACTATTGTGAAGAAATACAGAGAAAATTTCTTCAAAAGAAATGGAGGGTTATTATTACAACAAAAATTGTCTTCTGGTGAAGTTAATATGGATAAAGTTAAACTCTTCAGTTTAAAAGAATTGGAGAAGGCCACTGATAACTTTAATACAAATAGAGTACTTGGAAAAGGAGGTCAAGCTACGGTTTACAAAGGCATGTTGATAGATGGAACAATTATTGCAGTGAAAAAATTTAAGGTCCAAGGAAAGATTGAAGAATTTATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGGAACGTGGTTAAGTTGTTAGGAAGTTGTTTGGAGACTAAAATTCCTTTGCTTGTCTATGAATTCATTCCTAATGGTAATCTTTTCGAGTACTTGCATCAACAAAATGAGGATATGCCATTGACATGGGACATGCGTTTGAGAATTGCCATTGAAGTTGCAGGAGCTTTATTTTACTTGCACTCTGCTGCTTCTCAACCTATTTATCATAAAGACATCAAGTCAACAAATATATTGTTGGATGAAAAGTATAGGGCAAAAGTAGCGGACTTTGGTACATCAAGAATGATTTCCATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATATTTGGACCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTTTATAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATAACCCTTCGAAGTCAAGAGGAAGCCAAAAGTTTAGCTTCATATTTCATCATGTCTGTGGAGGAAAATTGTGTGTTTGATATTATTGATGAAAGAGTGATGAAGGAAGGGGAGAAATACCATATTATGAAAGTTGTCAATCTTGCAAGTCAATGTTTAGAGTTGAACGGAAAGAGGCGACCAACTATGAGGGAAATCACATTGGAATTAGAAGGTATTCGAAAGTTGGAAAAAGATTCTAATGCACAAGAAGGACATGGAGACTTTGTTAGAAGTGAAGACTATGAATCTTTGGATGATAACTCTATTATCTCAGAAATAATGTCAACTTTTGAACTACGTAGCAGAACAACAATCTTGAAAGATGATCATGTTGTTACCATGTGA 2145 0.3772 MILKLVIHFIILVIWFIHVQVSAQDYPQVLAKPGCDSQCGDIAIPFPFGMNTSECYAGKWFEIECGNTSTYQKPYLKSIGVQVRFIDVQQGTVTVNNPIDRNNCGSKDSRPVNQSLEGSPFVYSQEHNKFVAVGCNIITFLQVNGSEGSGCVSICDEDFKVDDIGKMELENSDCNGKSCCQNSLPPYLKEYSTEVKGLKENETNRECSYAMVVQDYFSFYYTRKGYYFPIDGEMKDVDVVPVVLEWEIPNNLNLKLPPDDLSHCFDTNITSSRYNRSGQRCSCTYGSNPYVEGGCSDYYESSRNSLSHVTISIIKGVSISFGSIILLLLILWRVFKVIKTTIVKKYRENFFKRNGGLLLQQKLSSGEVNMDKVKLFSLKELEKATDNFNTNRVLGKGGQATVYKGMLIDGTIIAVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFEYLHQQNEDMPLTWDMRLRIAIEVAGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLRSQEEAKSLASYFIMSVEENCVFDIIDERVMKEGEKYHIMKVVNLASQCLELNGKRRPTMREITLELEGIRKLEKDSNAQEGHGDFVRSEDYESLDDNSIISEIMSTFELRSRTTILKDDHVVTM 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01300 714 SMART serkin_6 388 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01300 714 CDD STKc_IRAK 394 659 - -
Vian6g01300 714 SUPERFAMILY Protein kinase-like (PK-like) 369 656 IPR011009 -
Vian6g01300 714 Pfam Wall-associated receptor kinase galacturonan-binding 35 96 IPR025287 GO:0030247
Vian6g01300 714 Pfam Protein tyrosine and serine/threonine kinase 390 655 IPR001245 GO:0004672|GO:0006468
Vian6g01300 714 FunFam Wall-associated receptor kinase 2 358 461 - -
Vian6g01300 714 Gene3D Transferase(Phosphotransferase) domain 1 462 682 - -
Vian6g01300 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Vian6g01300 714 Gene3D Phosphorylase Kinase; domain 1 359 461 - -
Vian6g01300 714 FunFam Wall-associated receptor kinase 2 462 677 - -
Vian6g01300 714 ProSiteProfiles Protein kinase domain profile. 388 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01300 714 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 665 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01300 Vian-Chr6 30619309 30623730 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01300 10 666 Receptor kinase-like Gene Family AT1G16130 42.556 2.12e-173 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vian6g01300 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01300 - - gmx:100775935 880.167