Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01299 ATGACTGAGTATGATGAGTATGGCACACCTCTGGACCGTGAAACATTTATGAAAGAGCTTGAGAATTTCTACAGACAGCGGTCCTTGGAATTTAAGCCTCCTATGTTTTACGGAGAGCCTCTAAATTACCTTAAGTTGTGGAGAGCTGTTATCAGACTGGGTTGCTATGATGTGGTATTTCAAGCAATTGGTGCTTTCAGAGGATTTCTAAGACCATATTCTCTTGTAAGTAGTGAAAAATTTCAAGAATAA 252 0.3889 MTEYDEYGTPLDRETFMKELENFYRQRSLEFKPPMFYGEPLNYLKLWRAVIRLGCYDVVFQAIGAFRGFLRPYSLVSSEKFQE 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01299 83 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 8 60 IPR045147 GO:0006357
Vian6g01299 83 ProSiteProfiles ARID domain profile. 10 83 IPR001606 GO:0003677
Vian6g01299 83 CDD ARID 12 59 - -
Vian6g01299 83 SUPERFAMILY ARID-like 5 61 IPR036431 GO:0003677
Vian6g01299 83 Gene3D - 2 80 IPR036431 GO:0003677
Vian6g01299 83 Pfam ARID/BRIGHT DNA binding domain 13 61 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01299 Vian-Chr6 30614622 30615253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01299 5 59 ARID Transcription Factor Family AT1G20910 61.818 8.22e-21 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian6g01299 ARID 4.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01299 - - vra:106762506 117.857