Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01298 ATGATTTCCATTGATGTTACTCACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGACCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTCTATAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATAACCCTTCTAAGTCAAGAGGAAGCCAAAAGTTTAGCTTCATATTTCATCATGTGTGTGGAGGAAAATTGTGTTTTTGATATTATTGATGAAAGAGTGATGAAGGAAGCGGAGAAATGCCATATTATGAAAGTTGTCAATCTTGCAAGTCAATGTTTAGAGTTGAACGGAAAGAGGCGACCAACTATGAGGGAAATCACATTGGAATTAGAAGGTATTCGAAAGTTGGAAAAAGATTCTAATGCACAAGAAGGACATGGAGACTTTGTTAGAAGTGAAGACTATGAATCTTTGGATGATAACTCTATTCTCTCAGAAATAATGTCAACTTTTGAACTATGTAGCAGAACAACAATCTTGAAAGATGTTCATATTGTTACCATGTGA 543 0.3462 MISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLLSQEEAKSLASYFIMCVEENCVFDIIDERVMKEAEKCHIMKVVNLASQCLELNGKRRPTMREITLELEGIRKLEKDSNAQEGHGDFVRSEDYESLDDNSILSEIMSTFELCSRTTILKDVHIVTM 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01298 180 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 132 IPR045274 GO:0007166
Vian6g01298 180 Gene3D Transferase(Phosphotransferase) domain 1 2 149 - -
Vian6g01298 180 Pfam Protein tyrosine and serine/threonine kinase 17 121 IPR001245 GO:0004672|GO:0006468
Vian6g01298 180 ProSiteProfiles Protein kinase domain profile. 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01298 180 SUPERFAMILY Protein kinase-like (PK-like) 6 123 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01298 Vian-Chr6 30607931 30608473 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01298 2 132 Receptor kinase-like Gene Family AT1G16130 58.015 2.45e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vian6g01298 PK_Tyr_Ser-Thr 6.6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01298 - - var:108341605 318.931