Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01276 ATGTACCCGAGGCTCATACACCCCCATGATGGGATTGTGGCGCAGGATGACATGCAGGCTGCTGCTTCCAACCTCTCTCACTCTCACAAGGGAGACCCTTGTCTCGTTCTCACTGCTGATCCCAAACCTCGCCTTCGTTGGACTCAGGACTTGCACGAACGATTCGTTGATGCCGTCACACAGCTTGGGGGAGCAAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTCTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAAGATGTTGGTGAAGGATGCAAAGACGGTATGATTGTCATTCCCCTCTCTGGATCATTTATGTTCCCATCTTCTGAGTATGCTTGTCCAATGTGTTCTGTAGCTGTCTTTCTTTTTCCCTTTCCACAGATAGGGTGTCCATCTGGACTTTTAATCTGTACAGAGACTACACTAATTTACTCTAAGCTTTTCTGTCATTGTCTTGGCTTCAAACTGACTTCTTTTATGGAAGGAATATCAGGTTCATATCTTTTAGAAAGCCCTGGCACTGAGAACACTTCTCCAAAGCTGCCAACTTCCGACACAAACGAGGGATATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAGAGTAAGTTACATTTGCAAGTGGAGGCAGAGAAGCATTTGCAGATTCGGCAGGATGCAGAAAGGAGATACATGGCCATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCTACAGTTATAGACACTGACAGCCAAAAGTTTCAAGCAATTGGAAGCAAAACACCTAGAGGTACTTTGGTTGATCCTCTTGGATTTTACTCCTTGCCATCAGCTGAGGTGGCCGGGGTGAATGTTCCAGATGAAGAAATAGCACCTAGTCTCCCACCCCAAAGGGCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAAAGTTCTGGAGGATTGACTTTAGAAGGATCACCCGGTGGGGGAAAAAGAAGGATGCTAGGCATGGACTCCATGGCAGCTCCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAGGCCATCAATGTGGCCCAAGGTAGTCTTCCTCAAGGAATAACTAGGTACTTGAACTCATGTCTTAGTTGTGGTGTTTTTCTTCATGTGGGGCCAGAACCCCAGTTACCAGGAGTAGTATCTGCAAAAATCAGCCTTGTTGGATGGGGTGCTAGGCTTTTCATCTCGGACATTCTGGGTGGGTTTAACCTATACAAGGAAACAGTGTGCCTTTCCATGAGGCTCGAGTTTTTTCCTGGGAACTCACCTGAAGAAAGAAATCGAGAGGCTTTAGTTCATGGTCAGCACATAGATTGTGGTGGCAGCGCAATGGATCCTGGCAATGGAGGAAACAATCATAGCAACAACTCTAATCTTACCTCAAAACAACGTCTACGGTGGACACATGAATTACACGAGCGCTTCGTTGATGCTGTGGCTCAACTTGGTGGGCCAGATCGTGCCACACCCAAAGGTGTCCTTAGAGTTATGGGTGTACAAGGATTGACCATTTACCATGTCAAAAGCCATTTACAGAAGTACCGACTAGCAAAATATTTACCGGATTCCTCATCTGATGGGAAAAAGGCTGACAAGAAAGAAACTGGGGATGTGCTTTCCAATCTCGATGGTTCATCTGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTCCAGAAGCGACTACATGAACAATTGGAGGTGCAGAGACAGCTACAATTACGGATAGAAGCCCAGGGTAAATACCTGAAAAAGATAATCGAAGAACAACAGCGGCTCAGTGGGGTTCTTTCAGAGGCACCTGACACTGAGGTTGTGGCTGTGGTTCCGGGGGACGTGTGCCAAGAACCGGATAATAAGACCGACCCGTCTACCCCCGACCCAGAAAAGGCTGCCAAAGACCGTGTCCCAGCAAAGAGTCTTTCCATGGAATCTTTTTCATCACACCATGAACCATTGACTCCAGATTCTGGTTGCCATATTGGTTCCCCTGCTGACAGCCCTAAAGGGGAGAGATCAACCAAGAAGCAACGGCTAAACATGGACGGATCGTATTCAAAGCCAGACATGGTGCTTCCACTTCAGATACTGGAGTCAAGCATGTCACAATACCAACATCCTAGCACTGTTTTTCTTGGCCAAGAGCAATTTGATCCTTCATTGGGTATGGCTACCAGAAGTGGTGAGGAATTGGATAAGGTTGGTGGCAGTAATCTGTGA 2301 0.4646 MYPRLIHPHDGIVAQDDMQAAASNLSHSHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGMIVIPLSGSFMFPSSEYACPMCSVAVFLFPFPQIGCPSGLLICTETTLIYSKLFCHCLGFKLTSFMEGISGSYLLESPGTENTSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQAIGSKTPRGTLVDPLGFYSLPSAEVAGVNVPDEEIAPSLPPQRADCSTESCLTSHESSGGLTLEGSPGGGKRRMLGMDSMAAPLIWSEAKMRTQAINVAQGSLPQGITRYLNSCLSCGVFLHVGPEPQLPGVVSAKISLVGWGARLFISDILGGFNLYKETVCLSMRLEFFPGNSPEERNREALVHGQHIDCGGSAMDPGNGGNNHSNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDVLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPDTEVVAVVPGDVCQEPDNKTDPSTPDPEKAAKDRVPAKSLSMESFSSHHEPLTPDSGCHIGSPADSPKGERSTKKQRLNMDGSYSKPDMVLPLQILESSMSQYQHPSTVFLGQEQFDPSLGMATRSGEELDKVGGSNL 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01276 766 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Vian6g01276 766 Coils Coil 576 596 - -
Vian6g01276 766 FunFam Myb family transcription factor 41 99 - -
Vian6g01276 766 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 480 754 IPR044848 GO:0003700
Vian6g01276 766 Pfam MYB-CC type transfactor, LHEQLE motif 573 619 IPR025756 -
Vian6g01276 766 Pfam MYB-CC type transfactor, LHEQLE motif 208 253 IPR025756 -
Vian6g01276 766 Gene3D - 486 545 - -
Vian6g01276 766 Gene3D - 41 99 - -
Vian6g01276 766 MobiDBLite consensus disorder prediction 649 664 - -
Vian6g01276 766 MobiDBLite consensus disorder prediction 315 333 - -
Vian6g01276 766 MobiDBLite consensus disorder prediction 547 563 - -
Vian6g01276 766 MobiDBLite consensus disorder prediction 546 569 - -
Vian6g01276 766 MobiDBLite consensus disorder prediction 637 714 - -
Vian6g01276 766 MobiDBLite consensus disorder prediction 747 766 - -
Vian6g01276 766 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Vian6g01276 766 SUPERFAMILY Homeodomain-like 485 541 IPR009057 -
Vian6g01276 766 FunFam Myb family transcription factor 486 544 - -
Vian6g01276 766 Pfam Myb-like DNA-binding domain 490 540 IPR001005 -
Vian6g01276 766 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Vian6g01276 766 MobiDBLite consensus disorder prediction 307 341 - -
Vian6g01276 766 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Vian6g01276 766 NCBIfam myb-like DNA-binding domain, SHAQKYF class 487 542 IPR006447 GO:0003677
Vian6g01276 766 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 486 544 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01276 Vian-Chr6 30369510 30384287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01276 522 766 G2-like Transcription Factor Family AT2G01060 64.032 2.10e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian6g01276 Myb_DNA-binding 6.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01276 - - qsu:112015623 687.952