Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01273 ATGTCTCAATACCATGGTGATGAAATGGACTATGCGGCAGATGATAATGAAATGGCAGAGGTAGAAGATGACATGTATTTTCGCGGCAGAGCATTTGGTGAATCAGATTCAGATGACGATGACGACTACGAATATGACCCTTTGGAGGACCGAATAACAGATACCACTGCTGCAGAAGCTAGGAGGGGGAAGGATATCCAAGGTATACCTTGGGATAGGTTGACCATTAGTCGCGAGAAATATAGACAAACCAGACTAGAGCAATACAAGAATTATGAAAATATACCGCAATCTGGGGAAATGTCAGAGAAGGAATGCAAAGCAACAGATAAAGGGGGAAATTATTATGATTTCTGGCAAAACACTAGATCTGTGAAGTCAACAATACTTCATTTCCAATTGAGGAATTTGGTTTGGTCAACATCAAAACATGACGTATATCTTGTTTCAAATTACTCAATTGTTCACTGGTCTTCATTAAGTTCTAAGAGTTCTGAAGTCTTGAATGTAGCAGGGCATGTAGCTCCGTGTGAGAAACATCCTGGAAGCCTCTTGGAAGGTTTTACTCAGACACAAATTAGTACACTGGCAGTGCGTAATAACTTGTTGATTGCTGGAGGGTTTCAAGGAGAACTTATTTGCAAGTACTTAGACCGGCCTGGAGTTAGTTTTTGTACTCGAACTACATATGAGGACAATGCAATCACAAATGCTGTGGAGATTTATGATCATCCGAGCGGAGCTGTTCATTTCATGGCTTCAAACAATGACTCTGGAGTTAGAGACTTTGATATGGAGAGGTTTCAGCTTTCAAAGCATTTTTCCTTTCCTTGGCCAGTAAATCATACTTCATTAAGCCCTGATGGGAAACTACTTGCAATTGTTGGAGACAACCCAGAAGCACTACTGGTGGATTCTCAAACAGGAAAGACTATCACACCTTTGCATGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTAATGGGCAAATATTTGCTACCGGGAACCAAGACAAAACATGTCGTGTTTGGGATGTTCGGAACTTGTCAAAATCTGTTGCTGTTCTTAAAGGCAACCTTGGAGCTATACGTTCAATACGTTTCACATCTGACGGGCAGTTCATGGCGATGGCAGAGCCAGCCGACTTCGTGCATGTTTACGATGCAAAGCATGGGTTTGAAAAGGAGCAGGAGATTGATTTTTTTGGGGAGATCTCTGGTGTGTCCTTTAGCCCTGACACAGAATCACTTTTCATTGGTGTTTGGGACCGCACCTATGGAAGCCTTCTACAGCTGAATCGACGCAGAAATTACATGTATCTGGACTGCTTGTAA 1341 0.4221 MSQYHGDEMDYAADDNEMAEVEDDMYFRGRAFGESDSDDDDDYEYDPLEDRITDTTAAEARRGKDIQGIPWDRLTISREKYRQTRLEQYKNYENIPQSGEMSEKECKATDKGGNYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSNYSIVHWSSLSSKSSEVLNVAGHVAPCEKHPGSLLEGFTQTQISTLAVRNNLLIAGGFQGELICKYLDRPGVSFCTRTTYEDNAITNAVEIYDHPSGAVHFMASNNDSGVRDFDMERFQLSKHFSFPWPVNHTSLSPDGKLLAIVGDNPEALLVDSQTGKTITPLHGHLDFSFASAWHPNGQIFATGNQDKTCRVWDVRNLSKSVAVLKGNLGAIRSIRFTSDGQFMAMAEPADFVHVYDAKHGFEKEQEIDFFGEISGVSFSPDTESLFIGVWDRTYGSLLQLNRRRNYMYLDCL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01273 446 Pfam WD domain, G-beta repeat 310 347 IPR001680 GO:0005515
Vian6g01273 446 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 445 - -
Vian6g01273 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 350 - -
Vian6g01273 446 MobiDBLite consensus disorder prediction 1 45 - -
Vian6g01273 446 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 189 427 IPR011047 -
Vian6g01273 446 Gene3D - 236 441 IPR015943 GO:0005515
Vian6g01273 446 SMART WD40_4 267 305 IPR001680 GO:0005515
Vian6g01273 446 SMART WD40_4 351 390 IPR001680 GO:0005515
Vian6g01273 446 SMART WD40_4 308 347 IPR001680 GO:0005515
Vian6g01273 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Vian6g01273 446 FunFam WD-40 repeat family protein 228 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01273 Vian-Chr6 30342876 30346944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01273 303 427 Miscellaneous Gene Families AT5G08390 28.000 2.03e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01273 - - gmx:100788712 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01273 6 30342876 30346944 Vian6g01273 6 30342876 30346944 ECH