Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01261 ATGGGTGAAAGAGCTTTAGTATTCCTACTACTATTTTTCACTCATTCGTTGATTGTACAAGCAAATACAGCAAATCAGGATTACACTGCTCTGCTGACTCTAATGAGTGAATGGGATAACATTCCACCTAATTGGGTGGGTTCAAATCCTTGCGGTGGCTGGGATGGCATTGAGTGTACAAATTCACGCATTACCTCCATATCATTAGCAAGCATGGCTTTGTCTGGTCAACTTACTTCAGATATTGGATTACTCTCTGAACTCGTGATCTTGGATCTGTCTTACAATAAGAATTTAACTGGACCACTTCCCGATAACATTGGAAAGTTGAGAAAGCTGAGAAACTTACTTCTTATTAACTGTGGTTTCACTGGTCCTATTCCAGCTACAATTGGAAATCTAGAACGGCTTGTCTTCCTATCTTTAAATTCGAACGGATTCACTGGTCCAATTCCAGCTGCCATTGGGAATCTCTCAAATGTGTATTGGCTAGACTTAGCTGAAAACCAGCTTGAAGGGTCCATCCCCATATCCAATGGAACTACCCCTGGTCTTGACATGATGTACAACACAAAGCATTTTCATTTTGGGGTGAATAAGCTTTCAGGAAACATACCTGCTGAACTTTTTAGCTCAAAAATGTCTCTCATTCATGTGCTTTTTGAAAGCAACCGATTTACTGGAAGCATTCCATCTACACTTGGCCTTGTTAAGTCTCTGGAGGTGGTCCGTTTTGATAACAACTTTTTTAGTGGGTCTTTGCCTGAGAACATCAACAATCTTACAAGTGTTAGGGAACTGTTCCTGTCCAACAATCGCCTGTCTGGTTCCCTCCCAAACCTTACTGGAATGAATTCCCTCCGTTACCTAGATATGAGCAATAACAGTTTTGATCCATCCAACTTTCCACTGTCGTTGTCCACTCTTCCAGCATTGACGACAATAATGATGGAGAATACAAAACTTCAAGGAGCTATTCCTGTTTCTTTGTTCAACCTGCAACAGTTGCAGACAGTGGTGCTGAAAAACAACCAGCTAAATGGCACTTTAGATATTGGCAAATCCATCAGCGACCAACTGGACCTTCTTGATTTGCAGATTAATTATATTGAAGAATTTAAACCACAAATCGACGTTTCTAAAGTGAAGATAATACTTTTGAATAATCCAATTTGCCAAGAGACAGGAGTTCCACAGAGTTATTGTTCCATAACAACACCTAACAACTCATATTCAACGCCACCAGAAAACTGTGTACCTGTTCCCTGCAGCTTAGATCAGACATTAAGCCCGAAATGCAAATGTGCATACCCATATACAGGAACCTTAAATCTCAGAGCTCCTTCCTTCTCAGCTTTGGAAAACGAGACTGTCTATATAACCCTTCAGTTAAGTCTGATGCAGTCTTTTCAACATAATGATATACCTGTTGACTCAGTTTCTTTAAGCAATCCAAGGAAGAACACGTATCAGTACCTTGAATTGACTTTAAAAGTATTTCCATCTGGCCAAGATCGTTTTAATCGAACTGGAATTTCCAGTGTAGCCTTTATTCTCAGCAACCAAACATACAAGCCTCCTTCAATGTTTGGACCATATTATTTTACTTCTGATGACTATGAAAACTTTATGAATGACACAGTACTAGAAGGTCCTGTGATACCACCTAGTAAATCTTCAAATACTGCCATCATAGCTGGCGCTGCGGCTGGTGGTGCTGCCCTGTTGGTTTTAATACTTGTTATATTTGTGTATGCTCTCCACCGGAAGAATAAGCCAGTAAAAGCAACTGGGAAACATAATCCTTTTGAACAATGGGGTCCGGATGAGAGCAGTAGTAGCATCCCACAGTTGAAAGGAGCAAGGTGCTTCAGTTTTGAAGAGATACAGAACTGCACCAAAAACTTCTCACAAGTCAATAATATAGGATCTGGCGGTTATGGGAAGGTTTATCGGGGAACTCTTCCCAACGGCCAACTAATTGCAGTCAAGCGAGCTCAGAAGGAATCTATGCAGGGAGGGTTGGAGTTCAAAACCGAGATTGAACTTCTATCAAGGGTCCACCATAAAAATCTTGTCAGCCTTATTGGTTTCTGCTTCGAGCAAGGAGAACAAATGCTGATTTATGAGTATGTTGCAAATGGTACTTTGAAGGACACTCTTTTAGGGAAATCTGGAATCAGATTAGACTGGATTAGAAGGCTGAAAATAGCCCTTGGTGCTGCCAGGGGTCTGGACTATCTGCATGAACTTGCCAATCCTCCAATCATACATAGGGACATCAAATCCACTAACATTTTACTGGATGAACGCTTGAATGCTAAAGTGTCTGATTTTGGTCTCTCCAAACCTTTAGGTGACGGTGCAAAAGGTTATATCACCACACAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAGTATTATATGACTCAACAGTTGACTGAGAAAAGTGATGTTTACAGCTTCGGAGTGCTAATGTTGGAGATGATAACTGCAAGAAGGCCAATAGAGCGAGGGAAGTACATTGTGAAAGTGGTCAAGGGTGCTCTAGACAAGACAAAAGGCTTCTGTGGTCTTGAGGAAGTTCTTGATCCTACTATTGAATTGGGGACAGCATTGAATGGTTTTGAGAAGTTTGTGGATCTTGCCTTGCAGTGTGTTGAAGAGTCAAGTTCTGACAGGCCTTCAATGAATTATGTGGTGAAAGAAATTGAGAACATGTTGCAGTTGGCCGGTTCAAGCCCCATTTTATCAGTATCAGGGTCCACTTCATCTAGTTATAACAATCCAACAAAGGGTAGTTCCCTCCATCCTTACGACAATGAATACTTTGATTCGAGTGTTGTCCTTCCACGTCCATAA 2865 0.4119 MGERALVFLLLFFTHSLIVQANTANQDYTALLTLMSEWDNIPPNWVGSNPCGGWDGIECTNSRITSISLASMALSGQLTSDIGLLSELVILDLSYNKNLTGPLPDNIGKLRKLRNLLLINCGFTGPIPATIGNLERLVFLSLNSNGFTGPIPAAIGNLSNVYWLDLAENQLEGSIPISNGTTPGLDMMYNTKHFHFGVNKLSGNIPAELFSSKMSLIHVLFESNRFTGSIPSTLGLVKSLEVVRFDNNFFSGSLPENINNLTSVRELFLSNNRLSGSLPNLTGMNSLRYLDMSNNSFDPSNFPLSLSTLPALTTIMMENTKLQGAIPVSLFNLQQLQTVVLKNNQLNGTLDIGKSISDQLDLLDLQINYIEEFKPQIDVSKVKIILLNNPICQETGVPQSYCSITTPNNSYSTPPENCVPVPCSLDQTLSPKCKCAYPYTGTLNLRAPSFSALENETVYITLQLSLMQSFQHNDIPVDSVSLSNPRKNTYQYLELTLKVFPSGQDRFNRTGISSVAFILSNQTYKPPSMFGPYYFTSDDYENFMNDTVLEGPVIPPSKSSNTAIIAGAAAGGAALLVLILVIFVYALHRKNKPVKATGKHNPFEQWGPDESSSSIPQLKGARCFSFEEIQNCTKNFSQVNNIGSGGYGKVYRGTLPNGQLIAVKRAQKESMQGGLEFKTEIELLSRVHHKNLVSLIGFCFEQGEQMLIYEYVANGTLKDTLLGKSGIRLDWIRRLKIALGAARGLDYLHELANPPIIHRDIKSTNILLDERLNAKVSDFGLSKPLGDGAKGYITTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLEMITARRPIERGKYIVKVVKGALDKTKGFCGLEEVLDPTIELGTALNGFEKFVDLALQCVEESSSDRPSMNYVVKEIENMLQLAGSSPILSVSGSTSSSYNNPTKGSSLHPYDNEYFDSSVVLPRP 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01261 954 Gene3D Ribonuclease Inhibitor 23 180 IPR032675 -
Vian6g01261 954 Gene3D Ribonuclease Inhibitor 181 278 IPR032675 -
Vian6g01261 954 CDD STKc_IRAK 642 908 - -
Vian6g01261 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 756 768 IPR008271 GO:0004672|GO:0006468
Vian6g01261 954 Pfam Leucine Rich repeats (2 copies) 262 299 IPR025875 -
Vian6g01261 954 Gene3D Phosphorylase Kinase; domain 1 608 711 - -
Vian6g01261 954 ProSiteProfiles Protein kinase domain profile. 636 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01261 954 Gene3D Transferase(Phosphotransferase) domain 1 712 915 - -
Vian6g01261 954 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 712 920 - -
Vian6g01261 954 SUPERFAMILY L domain-like 58 400 - -
Vian6g01261 954 FunFam Leucine-rich repeat family protein 26 180 - -
Vian6g01261 954 ProSitePatterns Protein kinases ATP-binding region signature. 642 664 IPR017441 GO:0005524
Vian6g01261 954 PANTHER RECEPTOR-LIKE PROTEIN 55 41 908 - -
Vian6g01261 954 Gene3D Ribonuclease Inhibitor 279 410 IPR032675 -
Vian6g01261 954 SMART serkin_6 636 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01261 954 Pfam Leucine rich repeat N-terminal domain 24 59 IPR013210 -
Vian6g01261 954 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Vian6g01261 954 FunFam Leucine-rich repeat protein kinase family protein 603 711 - -
Vian6g01261 954 SUPERFAMILY Protein kinase-like (PK-like) 622 930 IPR011009 -
Vian6g01261 954 Pfam Protein tyrosine and serine/threonine kinase 639 904 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01261 Vian-Chr6 30251631 30260743 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01261 5 952 Receptor kinase-like Gene Family AT5G49760 56.723 0.0 1005
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vian6g01261 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01261 - - gmx:100780344 1563.13