Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01259 ATGGGTGAAAGAATACTGCTACCACTGTTGCTTTTCTTCAACTGTTTGCTCTGTGCAGTGGCACAAGATATTACCAAAGATCTTGAAGTTCTGAAGTCTCTGAGTGAGTCTTGGCAAGGTCAAATTCAAAACTGGGAGGGTTCAGATCCTTGCAGTTGGTATGGCATTAACTGCAGAAACTCACGAGTGGTTTCCATATCATTAACAGATATTGGTTTGACCGGCCAGCTTTCTGGAGATATAGGATCACTTTCTGAATTGGATAATCTGGATCTCTCAAACAATAGGGGCCTGACAGGACCACTTCCACGAGAAATTGGAAACTTGAAGAAGTTAACGAAACTAACTCTTGTTGGTTGTGGTTTTACTGGTCGTATTCCAGATGAAATAGGATCTCTGCAACAACTCGAAGTCTTATCTTTAAACTCCAACAATTTTGCTGGATCAATTCCACCTTCTATTGGCAATCTGTCAAATCTTACTTGGCTAGATTTAGCTGACAACCAGCTTGATGGATCCATCCCTGTATCTAGTGGCACTACCCCTGGTCTTGATATGTTACACAATGCATTGCACTTTCATCTTGGGAAGAATAGGCTTTCAGGACAAATTCCTCCGAAACTTTTTAGCTCGAAAATGACTCTGATACATGTGATTTTTCACAGCAATCTACTAGTTGGCAGCATTCCTGAAACGCTTGGGCTAGTTACGAGTTTGACAGTGGTGCGCTTTGAAAATAATTCACTGAATGGACATGTGCCTCAGAGCTTCGACAACCTTATCAATGTCACAGACCTGTTGTTGTCCAACAATAAGCTGGAAGGTGCAATGCCAAACCTTACTGGGATGAACTCACTAAGATACTTGGATCTGAGCAATAATAGCTTTGAAAAGTCAAACGTTCCACTTTGGCTTTCGAATCTGAAGAATTTAGCAACCTTACAAATGGAGAATTTGTACCTAGTTGGAACCATTCCGAACTTTTTATTTAGCCTTGGCAATTTACAGAATGTTGTGCTGAAAGACAACCACCTTGGTGGAACCTTGGATATTGGCACCAACTATAGCAGACAACTGCGAGTTATAGATTTGAGGTCAAATTCAATTCAGGACTATAAGCAATCAAATGATCCCCCACTTATCAGGATAATGCTCGCACATAACCCGATTTGCACTGAAAATGGAGCAGAAACTGTGCAGGATTACTGCACCAACCTGGATATCTTCGATACAAAGCAACAAAATAATTGTGAACATGGTAGCTGCAGCCCAGATCAGACTCTCAGCCCCAACTGCAAATGTGGATATCCATATACAGGAACATTGACTTGCAGAGCCCCTTCCTATTTTGACTGGAGTAATACAGCAAACCTGGAGGAAATTCTACTGAAGGAATTTCAATCTCATCATCTACCTGTTGATTCAGTTTCTTTAACCCTTTCAACTAAAGATCCATTTCGAGGTTTTGAGTTTATCATACAAATTTTCCCACTAGACCAAAATCATTTCAGCCAACAAGAGAAATCTAGTATAAGCTTCTTGCTTGGCAACCGAAGTGCATATAGTGCATTTGATTTTATTGCAGGAAACCAGGATGAAGAACCTAAGCAGTCAAGTAATTCATCAAGCACTGCAATAATTGTTGGAGTAGCAATTGGAGGTTCTTCTCTTTTGCTAGTGTTATTAGCCCTGGCTGGATTTTATGCTTTCCGCCAGAGGAGAAGAGCAGAAAGAGCAATATCTCGAAGCAATCCTTTCGGAAACTGGGATCCAAGTAAAAGCAATTGCGGCACCCCTCAGTTAAAAGCACCAAGGCAGTTCTCTTTTAAGGAAATTCAGAAATACACAAACAACTTCTCACAAGCCAATGATGTTGGATCAGGGGGTTATGGAAAGGTTTACCGGGGAACTCTTCCCACAGGGGAAGTTGTAGCCATAAAACGAGCTCAAAAAGAGTCAAAGCAGGGAGCACAAGAATTCAAAGCTGAAATTGAACTCCTTTCCCGGGTCCACCACATAAATCTGGTTAGCCTTGTGGGATTCTGCTTTGAACAGGAAGAACAAATGCTGGTTTACGAGTTCATTCCTAATGGAACTTTGAAGGATGCTCTCACATGGAAACGTGGAATCGCATTGAGCTGGAGCAGAAGGCTGAAAGTAGCCCTTGGTACTGCCAGGGGTTTGGCTTATCTTCATGAACATGCTGATCCCCCTATTATACACAGGGACATCAAGTCAAACAACATCTTGCTAGATGAGAACTATAATGCTAAAGTTTCTGATTTCGGTCTCTCCAAGTCTATCTTAGATGATGATAAAGATCATGTTACCACTCAAGTCAAAGGAACAATGGGCTACTTGGATCCAGATTATTATACTAGTCAGCGGTTGACTGAAAAGAGTGATGTCTATAGTTTTGGAGTGCTAATGCTGGAGTTAATTACTGCAAAAAGGCCAATAGAACGAGGGAAATACATTGTGAAAGTGGTCAGGAATACAATAGATAAGACAAAAGACTTGTATGGTCTTCACGAAACTATTGATCCAGCCCTTTGTTCAGGATCAACACTGGAGGGTTTTGAGAAGTTTGTTGACCTTGCAATGGAGTGTCTTCAAGATTCAGGAGTCGACAGGCCCACAATGAGTGAAGTGGTTAAAGAAATTGAAGAAATGTTGCGATCTCTTGGTTTGAACCTAACATCTGAATTAGCAGCATCCTCTTCATCCAGTCATAGATTTCAGGTGAGTATAGTGAGTTCCCAACTAGACCACCTTTACAGCAATGAATCTATTGGTTCAAGTGCAGAAAATTTATATTCAACAAGTGAGCACAGTTAA 2838 0.4109 MGERILLPLLLFFNCLLCAVAQDITKDLEVLKSLSESWQGQIQNWEGSDPCSWYGINCRNSRVVSISLTDIGLTGQLSGDIGSLSELDNLDLSNNRGLTGPLPREIGNLKKLTKLTLVGCGFTGRIPDEIGSLQQLEVLSLNSNNFAGSIPPSIGNLSNLTWLDLADNQLDGSIPVSSGTTPGLDMLHNALHFHLGKNRLSGQIPPKLFSSKMTLIHVIFHSNLLVGSIPETLGLVTSLTVVRFENNSLNGHVPQSFDNLINVTDLLLSNNKLEGAMPNLTGMNSLRYLDLSNNSFEKSNVPLWLSNLKNLATLQMENLYLVGTIPNFLFSLGNLQNVVLKDNHLGGTLDIGTNYSRQLRVIDLRSNSIQDYKQSNDPPLIRIMLAHNPICTENGAETVQDYCTNLDIFDTKQQNNCEHGSCSPDQTLSPNCKCGYPYTGTLTCRAPSYFDWSNTANLEEILLKEFQSHHLPVDSVSLTLSTKDPFRGFEFIIQIFPLDQNHFSQQEKSSISFLLGNRSAYSAFDFIAGNQDEEPKQSSNSSSTAIIVGVAIGGSSLLLVLLALAGFYAFRQRRRAERAISRSNPFGNWDPSKSNCGTPQLKAPRQFSFKEIQKYTNNFSQANDVGSGGYGKVYRGTLPTGEVVAIKRAQKESKQGAQEFKAEIELLSRVHHINLVSLVGFCFEQEEQMLVYEFIPNGTLKDALTWKRGIALSWSRRLKVALGTARGLAYLHEHADPPIIHRDIKSNNILLDENYNAKVSDFGLSKSILDDDKDHVTTQVKGTMGYLDPDYYTSQRLTEKSDVYSFGVLMLELITAKRPIERGKYIVKVVRNTIDKTKDLYGLHETIDPALCSGSTLEGFEKFVDLAMECLQDSGVDRPTMSEVVKEIEEMLRSLGLNLTSELAASSSSSHRFQVSIVSSQLDHLYSNESIGSSAENLYSTSEHS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01259 945 Gene3D Ribonuclease Inhibitor 22 179 IPR032675 -
Vian6g01259 945 Gene3D Phosphorylase Kinase; domain 1 591 694 - -
Vian6g01259 945 Gene3D Ribonuclease Inhibitor 180 397 IPR032675 -
Vian6g01259 945 Pfam Leucine rich repeat N-terminal domain 27 58 IPR013210 -
Vian6g01259 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Vian6g01259 945 ProSiteProfiles Protein kinase domain profile. 619 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01259 945 SUPERFAMILY L domain-like 24 413 - -
Vian6g01259 945 CDD STKc_IRAK 625 891 - -
Vian6g01259 945 FunFam Leucine-rich repeat protein kinase family protein 180 279 - -
Vian6g01259 945 SUPERFAMILY Protein kinase-like (PK-like) 605 921 IPR011009 -
Vian6g01259 945 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Vian6g01259 945 FunFam Leucine-rich repeat family protein 26 179 - -
Vian6g01259 945 PANTHER RECEPTOR-LIKE PROTEIN 55 36 891 - -
Vian6g01259 945 SMART serkin_6 619 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01259 945 Gene3D Transferase(Phosphotransferase) domain 1 695 906 - -
Vian6g01259 945 Pfam Protein tyrosine and serine/threonine kinase 622 887 IPR001245 GO:0004672|GO:0006468
Vian6g01259 945 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 695 904 - -
Vian6g01259 945 FunFam Leucine-rich repeat protein kinase family protein 588 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01259 Vian-Chr6 30239347 30245458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01259 2 909 Receptor kinase-like Gene Family AT5G49760 51.188 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vian6g01259 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01259 - - vra:106775737 1471.06