Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01251 ATGACTGACGATACCATGTGTTCTCCAAGCGACAAGGACTTGTCGCTGAGTCCTAATCTTGATATCACGATAGATGATGGCTCTCCGAACAGTGAACAACTTCTTGACATAGTTGATGAGGGCAACGAGCTTGACAATGAATGTGGACAATTGTTTGAGATTGATGGAAATGGAAGTGAAAATGGGAGGGATGAAACCACAGTAGTTGATAGTCACAGTGGAGAATCTCAAGGGAAAGACTGCCCCCCACCAGTTGTGGGAATGGAGTTTGACACCTATGATGATGCCTACAACTATTACAATACCTATGCCAAGGAAATTGGATTTGCTACTCGAGTTAAATCTTCTTGGACGAAACGTAACAGCAAAGAGAAGCGTGGTGCGGTTCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGAAGCAAATAGTCACAGGAAAGAAACAAGAACGGGCTGTCTAGCAATGATTAGATTGAGATTAGTGGAATCTAACAGGTGGAGAGTCGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCACAAAACTCTAAATCACATAAGAGGATGGACAGTAGGGCAAAAAGAAAAGTTGAGCCAACTCTAGACGTTGAAGTAAGAACAATCAAGTTATATCGAATGCCTGTTGCAGATGCATCAGGTTATGGAAGCTCAAATTCCACTGAAGGTGCAACTAACAACCACATTAATTGTTCCAAGCGTTTGAAACTTAAAAAAGGTGATCCGGAGCTGATTTCAAATTACTTCTGCCGCATTCAATTGACTAATCCTAACTTTTTCTATGTCATGGATCTGAATGATGATGGACAACTGAGGAATGTATTTTGGATTGACTCTAGATCTAGGGCTGCTTATAGTTATTTTGGTGATGTGGTTGCATTTGACTCAACGTGTTTGTCAAACAATTATGAGATTCCTCTTGTTGCATTTGTTGGTGTTAATCACCATGGCAAATCTATTTTGCTAGGATGTGGTCTGCTTGCAGATGAGACATTTGAAACATATATTTGGTTATTTAGGGCATGGCTCACATGTATGACTGGTCGCCCTCCACAAACTATGATCACAAACCAGTGTAAGGCCTTGCAAAGTGCAATTGCTGAGGTTTTCCCGCGAGCTCACCATAGAATTTGTCTATCGCAAGTCATGCAGAGCATTCTTGGGTGTCTTGTGCAGTTTCAGGAGTACGAGGCATTTCAAATTGAACTTACTAAAGTCATATATGACTCTAAAACAGTAGACGAGTTTGAAAGGGCTTGGGATGATCTAACCCAGCATTTTGGAATAAGAAATCACGAAAAGATCCTAACCTTGCATGAGGAACGAGAGCATTGGGCTCCAGTGTACTCCAAAGACACATTTTTTGCTGGAATATCTGATTATGAAAAGGGTGAGTCTGTGGTTCCCTTTTTCAAAGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAGCAGAAAAAACATAAAACCGAAGTTCTTGATGATCTTGAGTCATGCGATTTGAGCTCAATACTGAAGACAAGATGCTACTACGAGTTGCAAATCTCTAAATTGTACACAAATGCTGTATTTAGGAAGTTTCAAGATGAGGTGGTGATGATACCCTCTTGTTTCAGCATCACGCAGACTCAAACTAGTGGCTCTATGGTGACTTACATGGTAAAAGAACGAGAAGTGGAAGACCCTGCAACAGATGCTAGGCATTTTGAAGTCATGTATGATAAAGCTGGAACAGAAGTGCGCTGCATTTGTAGTTGCTTTAATTTCAAGGGCTACCTCTGCAGACATGCCTTGTATATCCTTAATTACAATGGTGTGGAGGAAATTCCATGTCAATACATTTTGTCAAGATGGAGGAAAGATTTTAAGCGTTTGTATGTACCTCATCTTAGTGCTGATAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGCCATGCGAGTTGTTGAAGAGGGGATGATGTCCCAAGATCATTATATGGTTTCTTGGCAAGCATTTAAAGAATCTCTGAATAAGATTCGCCTTGTAGCAGACAAGATTGAATAA 2124 0.4016 MTDDTMCSPSDKDLSLSPNLDITIDDGSPNSEQLLDIVDEGNELDNECGQLFEIDGNGSENGRDETTVVDSHSGESQGKDCPPPVVGMEFDTYDDAYNYYNTYAKEIGFATRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSRAKRKVEPTLDVEVRTIKLYRMPVADASGYGSSNSTEGATNNHINCSKRLKLKKGDPELISNYFCRIQLTNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHGKSILLGCGLLADETFETYIWLFRAWLTCMTGRPPQTMITNQCKALQSAIAEVFPRAHHRICLSQVMQSILGCLVQFQEYEAFQIELTKVIYDSKTVDEFERAWDDLTQHFGIRNHEKILTLHEEREHWAPVYSKDTFFAGISDYEKGESVVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEVLDDLESCDLSSILKTRCYYELQISKLYTNAVFRKFQDEVVMIPSCFSITQTQTSGSMVTYMVKEREVEDPATDARHFEVMYDKAGTEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSADNVDISNPVQCFDHLYKRAMRVVEEGMMSQDHYMVSWQAFKESLNKIRLVADKIE 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01251 707 SMART 26again6 600 627 IPR006564 GO:0008270
Vian6g01251 707 ProSiteProfiles Zinc finger SWIM-type profile. 589 625 IPR007527 GO:0008270
Vian6g01251 707 MobiDBLite consensus disorder prediction 179 202 - -
Vian6g01251 707 MobiDBLite consensus disorder prediction 1 32 - -
Vian6g01251 707 Pfam FAR1 DNA-binding domain 98 182 IPR004330 -
Vian6g01251 707 MobiDBLite consensus disorder prediction 1 30 - -
Vian6g01251 707 MobiDBLite consensus disorder prediction 55 83 - -
Vian6g01251 707 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 71 700 IPR031052 GO:0006355
Vian6g01251 707 Pfam MULE transposase domain 303 396 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01251 Vian-Chr6 30205451 30208624 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian6g01251 MULE 2.4e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01251 K17604 - gmx:100796448 1358.58