Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01231 ATGAAGGAAGGTGGTGGCAGAAAGCAGGGTGCAGCTTCACCCTGTGCTGCATGCAAGCTTCTCAGAAGAAGGTGTGCTCAAGATTGTGTTTTTGCTCCATATTTTCCAGCAGATGAACCTCAAAAGTTTGCTAATGTGCATAAGGTCTTTGGTGCTAGCAATGTCAACAAAATGCTTCAGGACCTACCGATGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTACGAGGCTAATGCCAGAGTCCGAGACCCAGTTTACGGGTGTGTTGGGGCCATCTCTTCTCTTCAGCAACAGATCGATGTGCTACAGACCCAATTGGCCCTGGCCCAGGCTGAGGTGGCCCACCTCAGGGTCAGGCAAAATAGGTGTTTTTCCAATCATGGGCCTAGACCTACTAGCCCAACCAATACATTGGACTCACATGTCAAGCCTATTTTCGACATGGACATGGTGGTGGACCAGGCCAGCTATGGGATGGTGGTGCCGGTGGTGGCCGGCGACCGTGGTGATGGAGGAGCTGTGGTGGAGGCCGTTCGCCCGCTTAATTGA 552 0.5236 MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRVRQNRCFSNHGPRPTSPTNTLDSHVKPIFDMDMVVDQASYGMVVPVVAGDRGDGGAVVEAVRPLN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01231 183 Coils Coil 93 120 - -
Vian6g01231 183 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Vian6g01231 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 123 - -
Vian6g01231 183 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01231 Vian-Chr6 30009140 30011909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01231 1 159 AS2 family AT1G31320 72.093 1.57e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian6g01231 LOB 2.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01231 - - gmx:100794219 303.523