Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01225 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGTGGCCTCGACACCGCTCCCTCCGCCGCCGCCGCTCCCTCTGGTCCACTCGTCCAACATGACTCCTCCGCTGCCGCTTCCGCCGTTTCCAATGGAGGTCCTCCCGCCCCGGCCCCCTCCGCAGCCGACCCCGCATCCGTCAACGTTCCCGGCCGACGGAGCTTCCGGCAGACGGTATGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTTCTGCACCAGTACGACAAGGCGCGGATGCCTGTTTGTCGATTCTTCAGGCTCTATGGAGAGTGTCGGGAACAGGATTGCGTGTATAAACACACGAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAGAAGATCCAACATTTATATTCCTACAATTATAATTCATCTAACAAATTTTTCCAACAAAGGGGTTCCAGCTATGCCCAACAAGCTGAAAAATCCCAACTTCCTCAAGGAACAAACTCTACAAATCAAGTGGTGACTGGAAAACCATTGCCAGCAGAGTCAGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAGCCAAATGCAAAATGTTGCTAATGGCCAGCCTAATCAAGCCAGTAGATCTGCTACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGTAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAACTTCTCAGTTAAATGGTTGAAGTTATGTGAATTGTCTTTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAAGAGCTGGAGCCCTCTATTGGAGAGCAACTGGCATCATTGCTTTATCTTGAGCCAGATGGTGAACTTATGGCCGTTTCAGTTGCAGCCGAGTCTAAACGGGAAGAAGAAAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCATGGTGTAGGGCCAGCTGGTCAAGGCAGGGGTAGGGGCAGAGGTATGATGTGGCCACCTCACATGCCCCTTGGGCGTGGAGCCCGACCCATGCCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGTTATCCTATGGGCCAGTTGCACCTGATGGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGTGCTTTTGCACCATACGGTCCCAGGTTCTCTGGTGATTTTGGAGGTCCTCCAGCAGCCATGATGTTTCGAGGACGACCTTCTCAACCAGGGATGTTTCCAGGTGGTGGTTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTCATGGGGGGGATGGGGGTTGCAGGGGCAAATCCGCCAAGAGGTGGTAGGCCGGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAACACAAACCGTCTTGCCAAAAGAGATCAAAGAGCTACTGATAGAAATGATAGGTATGGTTCCGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCTGATGATGACACGCAGTATCAGCAAGGATACAAAGCCAACCAGGATGATCATCCTGCTGTCAACAACTTCCGGAATGATGACAGTGAAAGTGAAGATGAAGCACCTAGGAGGTCAAGACATGGAGAGGGGAAAAAGAAAAGGCGGGGCCCAGAAGATGTCAATACAAACTATAATCATTAG 2091 0.4912 MEDSEGVLSFDFEGGLDTAPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPAPSAADPASVNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSSYAQQAEKSQLPQGTNSTNQVVTGKPLPAESGNAQPQQQVQQSQQQVSQSQMQNVANGQPNQASRSATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQNTNRLAKRDQRATDRNDRYGSGSEQGKSQDMLSQSGAPDDDTQYQQGYKANQDDHPAVNNFRNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01225 696 MobiDBLite consensus disorder prediction 181 251 - -
Vian6g01225 696 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Vian6g01225 696 MobiDBLite consensus disorder prediction 570 696 - -
Vian6g01225 696 Gene3D ph1033 like domains 235 395 - -
Vian6g01225 696 MobiDBLite consensus disorder prediction 431 449 - -
Vian6g01225 696 MobiDBLite consensus disorder prediction 582 600 - -
Vian6g01225 696 Gene3D - 62 125 - -
Vian6g01225 696 MobiDBLite consensus disorder prediction 406 470 - -
Vian6g01225 696 CDD YTH 258 392 IPR007275 GO:0003723
Vian6g01225 696 MobiDBLite consensus disorder prediction 621 656 - -
Vian6g01225 696 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 35 679 IPR045168 -
Vian6g01225 696 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 62 123 - -
Vian6g01225 696 MobiDBLite consensus disorder prediction 606 620 - -
Vian6g01225 696 ProSiteProfiles YTH domain profile. 257 392 IPR007275 GO:0003723
Vian6g01225 696 MobiDBLite consensus disorder prediction 657 690 - -
Vian6g01225 696 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Vian6g01225 696 MobiDBLite consensus disorder prediction 19 62 - -
Vian6g01225 696 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Vian6g01225 696 SMART c3hfinal6 67 93 IPR000571 GO:0046872
Vian6g01225 696 SMART c3hfinal6 123 147 IPR000571 GO:0046872
Vian6g01225 696 MobiDBLite consensus disorder prediction 406 420 - -
Vian6g01225 696 SUPERFAMILY CCCH zinc finger 67 98 IPR036855 GO:0046872
Vian6g01225 696 Pfam YT521-B-like domain 336 391 IPR007275 GO:0003723
Vian6g01225 696 Pfam YT521-B-like domain 257 319 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01225 Vian-Chr6 29951781 29962379 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian6g01225 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01225 K14404 - gmx:100802826 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01225 6 29951781 29962379 Vian6g01225 6 29951781 29962379 ECH