Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01220 ATGAATTCCCTTGGTCTCACTACTTTATGCTGTGTTCTGGTCGTGCTTGGAACACTACACTGCTTCTCATGTGATCAACTGGATCCTTGGTTTTACGATACCACATGCCCAAATGTTTCTTCAATTGTAACAGATGTTCTCTCAAATGTTTCCCAATCTGATCCTCGCATGCTTGCAAGTCTCATCAGACTCCACTTTCACGACTGTTTTGTTCAGATCAAGACAGCCGTAGAAAATGCTTGCCCTGGGGTTGTCTCCTGTGCTGATATTCTTGCTCTTGCAGCTGAGATATCTTCTGAACTGGCTGATGGTCCTTCTTGGGAAGTTCCACTGGGAAGAAGAGATAGTTTGACGGCAAATCGAACCCTTGCTAATCTAAGCCTTCCCGGTCCTAATTTTACACTTGATCAACTTATTTCCTCGTTTGCTAATCAGAACCTCACTGTCACTGATCTAGTTGCACTTTCAGGTGCCCATACAATTGGTAAGGCTCAATGCGGAGTTTTTGTGAATAGATTATACAATTTTAGCAGTGGGAACCCAGATCCTATTCTCAACACCACTCTCTTAGAATCATTGCGAGCAATATGTCCCAATGGTGGAGTTGGGACAAACCTCACCAATTTGGACGTAACTACTCCTGAAATATTCGATTCCATGTACTATTCCAATCTTCAACTTCAAAATGGCCTGCTTCGGAGTGATCAAGAGCTGTTTAGCACACCTGATGCAGAAACTGTTCCTATTGTCAACAGTTACATTAACGATCAAACTCTTTTCTTTGAAGATTTCATAGCGTCAATGATAAGAATGGGCAACATTGGAGTTTTGACAGGATCAGAAGGAGAAATTCGAAAACAATGCAACTTTGTGAATACAAATTCTTCTGCATTTGATATCTTTACCACCATAAATCATCAGAAGATGGAGTTGTTAGCTTAA 942 0.4119 MNSLGLTTLCCVLVVLGTLHCFSCDQLDPWFYDTTCPNVSSIVTDVLSNVSQSDPRMLASLIRLHFHDCFVQIKTAVENACPGVVSCADILALAAEISSELADGPSWEVPLGRRDSLTANRTLANLSLPGPNFTLDQLISSFANQNLTVTDLVALSGAHTIGKAQCGVFVNRLYNFSSGNPDPILNTTLLESLRAICPNGGVGTNLTNLDVTTPEIFDSMYYSNLQLQNGLLRSDQELFSTPDAETVPIVNSYINDQTLFFEDFIASMIRMGNIGVLTGSEGEIRKQCNFVNTNSSAFDIFTTINHQKMELLA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01220 313 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 PRINTS Haem peroxidase superfamily signature 151 166 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 PRINTS Haem peroxidase superfamily signature 210 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 PRINTS Haem peroxidase superfamily signature 85 102 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 PRINTS Haem peroxidase superfamily signature 103 115 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 151 161 IPR019793 -
Vian6g01220 313 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 PRINTS Plant peroxidase signature 224 241 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 PRINTS Plant peroxidase signature 208 223 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 PRINTS Plant peroxidase signature 266 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 SUPERFAMILY Heme-dependent peroxidases 26 292 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 Gene3D Peroxidase, domain 2 129 271 - -
Vian6g01220 313 Pfam Peroxidase 72 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 Gene3D - 73 292 - -
Vian6g01220 313 FunFam Peroxidase 129 271 - -
Vian6g01220 313 ProSiteProfiles Plant heme peroxidase family profile. 26 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian6g01220 313 Gene3D - 27 72 - -
Vian6g01220 313 CDD secretory_peroxidase 26 291 IPR033905 GO:0004601|GO:0042744
Vian6g01220 313 PANTHER PEROXIDASE 72-RELATED 24 72 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01220 Vian-Chr6 29896741 29898157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01220 12 297 Peroxidase AT5G06730 52.484 4.74e-110 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01220 K00430 - gsj:114367725 426.787