Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01210 ATGGTGTCAGGTTCGGGAATCTGCGCGAAGAGGGTGGTGGTTGACGCACGGCACCACATGCTGGGTCGACTTGCTTCCATTGTGGCAAAAGAACTTCTCAACGGCCAAAAGGTAGTGGTGGTGCGGTGCGAAGAGATCTGCATCTCCGGCGGCCTCGTGAGGCAGAAGATGAAGTACATGAGATTCCTGCGCAAACGCATGAACACCAAACCTTCTCATGGCCCAATTCATTTCCGCGCCCCCGCCAAGATCTTCTGGCGTACCGTTCGTGGAATGATACCGCACAAGACAAAACGTGGGGAAGCTGCTCTTGATCGTTTGAAGGTTTATGAGGGGATCCCTCCTCCGTATGACAAGACCAAGAGAATGGTTGTTCCTGACGCTCTCAAGGTTTTGAGACTTCAGAAAGGACACAAGTATTGTGTGCTGGGCAGGTTATCATCTGAAGTTGGATGGAGCTACTACGATACCATCAGGGAGTTGGAGAAGAAGAGGAAGGATAAGGCAGAGTTGGTTTACGAGAGAAAGAAGCAGCTCAACAAATTGAGGGTGAAAGCCGAGAAGATTGCTGATGAGAAACTCGCCTTATTCGCCAAAGGTGGTAGAGATGGTCTGACACTCCAGGAGCCAAAAAACAAACCCGACCTTTCCCTTTCGCCAAAGGATTATCGAAAAACCCAAATCAAGACCAGTTTGAACAGTCCTTGGTGTGCTAGCTTCTTTATATTAGACCCTTCTAAGAACTGTTCTGTTTTTCAAATCTACCCTTTTTCCAATCACATCTTCTGCTCTGATAGCCACTACAGCTTCTTTGTTCTCGATCTCAGGATGTTTCATTTGACTTTGTCTCAGGCTGCTGTAACTGTTCCTATTGGCAGCGATTTGTCTCTCAGAAGATCTGCGTTCAAGACCTCTAACTTAAACTTTCGGGATAAGTCATGGGCACCAGTATTAACTTTGGATTTGAAGGCTACCAGTTCTTGTTTAAGAAGTCGGAATGTGGTATGCATGTCAGTGCAACAAGCAAGCGTACCCAAAGTTTCTGTCTCACCTTTAGAACTGGAAGATGCTAAAGAACCTCCGTTGAACTTGCACAAGCCTAAAGAGCCCTATACAGCAACTATTGTGTCTGTTGAGAGGCTTGTGGGACCCAAAGCTCCTGGGGAAACTTGTCATATTGTGATTGATCATGGTGGAAATGTTCCCTACTGGGAAGGACAGAGTTATGGTGTTATTCCTCCAGGTGAAAATCCAAAGAAACCTGGGGCTCCCCATAATGTACGACTGTATTCAATTGCTTCCACGAGGTATGGAGACTTTTTTGATGGTAAAACAGCCAGCTTGTGTGTGCGCCGTGCTGTTTACTATGATCCTGAGACAGGAAAGGAAGATCCGTCCAAGAATGGCGTTTGTAGCAATTTTCTGTGTGACTCAAAGCCTGGAGACAAAATTAAGATCACAGGTGTGTTTGCTAATCTATACTTCCTCAATGTAATGTTGGAATATAACTTGTTTGCTGCTGTTTGTTTTCTGTTTAATCTATTGGACTTTATGTTGCGAATGGTAGAATCGTATGTGAAGACAGCAATGTGCTTAAATGATGAACGTTGCCCTTCAGGGAAGATAATGCTTTTGCCTGAGGATGACCCTAATGCTACCCATATAATGATTGCCACTGGCACTGGTGTTGCTCCATTCAGAGGCTATCTACGTCGAATGTTCATGGAATCTGTCCCTACATACAAGTTCGGTGGACTGGCATGGCTTTTCCTTGGCGTTGCCAACTCTGACAGTCTTCTCTACGATGAGGAATTCAGTAAATACCTCACGGATTATCCAGATAATTTCCGGTATGATCGAGCCCTTAGCAGAGAACAAAAGAACAAGAACGGGGGGAAAATGTATGTTCAGGATAAGATTGAGGAGTATAGTGATGAAATCTTCAAACTCCTGGATAACGGGGCCCACATATATTTTTGTGGTCTAAAAGGTATGATGCCTGGGATCCAAGACACACTGAAGAGGGTTGCTGAGCAAAGAGGAGAAAGTTGGGAAGAGAAGCTTTCTCAACTTAAGAAGAACAAACAGTGGCATGTTGAGGTCTACTGA 2109 0.4519 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGEAALDRLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCVLGRLSSEVGWSYYDTIRELEKKRKDKAELVYERKKQLNKLRVKAEKIADEKLALFAKGGRDGLTLQEPKNKPDLSLSPKDYRKTQIKTSLNSPWCASFFILDPSKNCSVFQIYPFSNHIFCSDSHYSFFVLDLRMFHLTLSQAAVTVPIGSDLSLRRSAFKTSNLNFRDKSWAPVLTLDLKATSSCLRSRNVVCMSVQQASVPKVSVSPLELEDAKEPPLNLHKPKEPYTATIVSVERLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPHNVRLYSIASTRYGDFFDGKTASLCVRRAVYYDPETGKEDPSKNGVCSNFLCDSKPGDKIKITGVFANLYFLNVMLEYNLFAAVCFLFNLLDFMLRMVESYVKTAMCLNDERCPSGKIMLLPEDDPNATHIMIATGTGVAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANSDSLLYDEEFSKYLTDYPDNFRYDRALSREQKNKNGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKRVAEQRGESWEEKLSQLKKNKQWHVEVY 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01210 702 FunFam Ferredoxin--NADP reductase, chloroplastic 540 702 - -
Vian6g01210 702 SUPERFAMILY Riboflavin synthase domain-like 358 496 IPR017938 -
Vian6g01210 702 Pfam Oxidoreductase NAD-binding domain 556 670 IPR001433 GO:0016491
Vian6g01210 702 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vian6g01210 702 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vian6g01210 702 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vian6g01210 702 FunFam 60S ribosomal protein L13a 155 199 - -
Vian6g01210 702 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vian6g01210 702 Gene3D - 540 701 IPR039261 -
Vian6g01210 702 PANTHER - 280 702 IPR015701 GO:0016491
Vian6g01210 702 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vian6g01210 702 Gene3D - 156 200 - -
Vian6g01210 702 CDD CYPOR_like_FNR 363 702 - -
Vian6g01210 702 Pfam Ribosomal protein L13 11 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vian6g01210 702 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 368 496 IPR017927 GO:0016491
Vian6g01210 702 FunFam Ferredoxin--NADP reductase, chloroplastic 352 490 - -
Vian6g01210 702 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 549 702 IPR039261 -
Vian6g01210 702 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vian6g01210 702 Coils Coil 674 694 - -
Vian6g01210 702 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 555 574 IPR001709 GO:0016491
Vian6g01210 702 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 403 413 IPR001709 GO:0016491
Vian6g01210 702 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 597 608 IPR001709 GO:0016491
Vian6g01210 702 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 585 594 IPR001709 GO:0016491
Vian6g01210 702 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 633 649 IPR001709 GO:0016491
Vian6g01210 702 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 656 664 IPR001709 GO:0016491
Vian6g01210 702 PIRSF FNR-PetH 535 702 IPR035442 GO:0016491
Vian6g01210 702 PIRSF FNR-PetH 276 497 IPR035442 GO:0016491
Vian6g01210 702 PIRSF Frd-NADP+_RD 278 498 IPR015701 GO:0016491
Vian6g01210 702 PIRSF Frd-NADP+_RD 534 702 IPR015701 GO:0016491
Vian6g01210 702 FunFam 60S ribosomal protein L13a-4 8 154 - -
Vian6g01210 702 Gene3D Translation factors 352 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01210 Vian-Chr6 29768559 29776512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01210 1 195 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 87.692 4.28e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01210 K02641 - gmx:100789291 704.131