Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01208 ATGGCTAACTATTGTCATCCTCATATCTGCCAATGTCTGAGTCGCTTGCTTGGCTTCGGGCGACATTTTCCGGTCACTGTCACCGGAAACCGCCGTAAAACTGGCCAACAGTTGGTTGAGGAAGTGTTGTCTTTGGCCCAAGGCCTACTCCACCTTGGACTCTCACCTGGTCACGTGGTTGCCATCTCTGCTTACAATAGGTATCTGGAATGGCTATTAGCCGTTGCATTTGTTGGAGGAATAGCTGCTCCTCTGAACTATAGATGGAGTTTTGAAGAGGCAAGATTAGCTTTGGCTGCAGTGAAGCCAGTGTTACTAGTGACTGACGAGAGCAGTTCCACATGGTACTCAAAACTCCAGCAAAATGATATTCCATCTCTGAAGTGGCATATTTTGTTGGATTCCGCTTCTTTAGATTTTACAAAGTGGAATGTGTTAACTCCAGAAATGATTAAGAGGCATCCTGTAAAGGTTGAACCATTTGACTACTCATGGGCACCTGAAGGCACTGTCATAATATGCTTTACTTCAGGTTCAAGATTCTCACTCAGATGCTTTTCCTCAGGACTCCAATTGATCGTGGTTTGGGGGTTAGTGGAGAAATTGATTTACCTGCAATCTTTGAATACGGGCACTGGAGCGGATTCTTTGAGGTACAAAGTGAAAAAGAGCAGAACTACGGGAAAGCCTAAGGGAGTCACTCTAAGTCATGGAGCTTTGATCATACAATCCTTAGCCAAGATTGCCATAGTTGGCTACAATGAGAATGATGTCTATCTGCATACTGCTCCGTTATGCCATATTGGTGGCTTGTCATCGGCCATGACCATGCTTATGGTTGGAGGTTGTCATGTCCTGATGCCAAAGTTTGATGCAGAATCAGCTGTTGGTGCCATAGAGCAATATGCAGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAATTAGGCCCAAAGAGATTTGGAAAGGAGGTGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACATGAGCTCATCAAGGACAGTAGCATATTCTTTCACAAAGCTAAGCTTATTTCAGCTTATGTGGATGAAAAGACAACCATGTCCCTTCAAACATTTGGTGTGGCAGGATCCAAGTTTATTCAGCAGCCACAAGGTGTCTGTGTTGGCAAGCCTGCACCCCATGTAGAACTGAAGATAAGTGCAGATGCTTCTGGTCTAATTGGAAGAATTCTAACAAGAGGACCACATATAATGCTTAGGTATTGGGAAACTCACACAAATCCAGTAAGCCCGAACAATGAAGTCTGGCTTGACACAGGTGATATTGGATCAATTGATCATTATGGTAACTTGTGGCTTCTTGGTCGAACAAATGGTCGAATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGGTTGAGGCAATTCTACTACAGCATCCAGGGATTACAAATGTTGTTGTTGTGGGAATCCCAGATGCTCACCTAACAGAGATGGTAGCAGCATGTATCCAACTTAGAGAAAATTGGCAATGGTCAGAGCAATTGACTGTTTCAGATGAAGAGTTTAACCTATCCAGAAAGAATCTCCAGCTATATTGTATAGAAAATCATTTAAGCAGGTTTAAGATACCAAAAATGTTTATTTCATGGAAAAAGCCATTTCCACTGACTACAACAGGGAAAATAAGAAGAGATCAAGTCAGAAAGGAAGTTATGTCTCAGCTACGATCTTTACATAGTAATCTTTGA 1764 0.4269 MANYCHPHICQCLSRLLGFGRHFPVTVTGNRRKTGQQLVEEVLSLAQGLLHLGLSPGHVVAISAYNRYLEWLLAVAFVGGIAAPLNYRWSFEEARLALAAVKPVLLVTDESSSTWYSKLQQNDIPSLKWHILLDSASLDFTKWNVLTPEMIKRHPVKVEPFDYSWAPEGTVIICFTSGSRFSLRCFSSGLQLIVVWGLVEKLIYLQSLNTGTGADSLRYKVKKSRTTGKPKGVTLSHGALIIQSLAKIAIVGYNENDVYLHTAPLCHIGGLSSAMTMLMVGGCHVLMPKFDAESAVGAIEQYAVTSFITVPAIMASLISVIRPKEIWKGGETVKKILNGGGSLSHELIKDSSIFFHKAKLISAYVDEKTTMSLQTFGVAGSKFIQQPQGVCVGKPAPHVELKISADASGLIGRILTRGPHIMLRYWETHTNPVSPNNEVWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILLQHPGITNVVVVGIPDAHLTEMVAACIQLRENWQWSEQLTVSDEEFNLSRKNLQLYCIENHLSRFKIPKMFISWKKPFPLTTTGKIRRDQVRKEVMSQLRSLHSNL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01208 587 Gene3D - 20 182 IPR042099 -
Vian6g01208 587 Pfam AMP-binding enzyme 226 467 IPR000873 -
Vian6g01208 587 Pfam AMP-binding enzyme 27 179 IPR000873 -
Vian6g01208 587 CDD AFD_class_I 226 568 - -
Vian6g01208 587 Gene3D - 224 462 IPR042099 -
Vian6g01208 587 SUPERFAMILY Acetyl-CoA synthetase-like 8 578 - -
Vian6g01208 587 PANTHER ACYL-COA SYNTHETASE 32 179 - -
Vian6g01208 587 Pfam AMP-binding enzyme C-terminal domain 476 566 IPR025110 -
Vian6g01208 587 Gene3D - 463 580 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01208 Vian-Chr6 29741710 29748781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01208 215 582 Monolignol Biosynthesis Gene Families AT4G19010 27.937 7.53e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01208 K14760 - gmx:100809925 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01208 6 29741710 29748781 Vian6g01208 6 29741710 29748781 ECH