Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01204 ATGAAGCCATTTAACTTTTTAGTGTTATCTTTGTATTTCTTCTCCGTGGTGGGGCAGCTTCCTTCTCAGGATATTTTAGCATTGCTGGAGTTCAAGAAAGGCATCAAACACGACCCCACTGGCTATGTGCTCAGTTCCTGGAATGAGGAATCCATTGATTTTGATGGATGCCCGTCTTCATGGAATGGAGTTTTGTGCAATGGTGGTAATGTTGCTGGGGTTGTCCTTGATAACTTGGGTCTCTCTGCTGACACAGACTTGAGTGTGTTTTCCAATCTCACCAAGCTTGTGAAACTCTCCATGTCCAACAATTCCATAACAGGAATTCTACATGGCAGCATTGCGGAGTTCAAAAGCCTTGAATTCCTGGATATTTCCAATAACCTCTTTTCCTCATCTTTGCCATTAGAAATTGGTATGTTAAGCAGTCTGCAGAACCTGTCTTTGGCTGGAAATAATTTCTCTGGTCCAATTCCGGACTCAGTGTCAGAAATGGCTTCCATCAAGTCCATGGATTTGAGCCGCAACTCTTTCTCCGGAGAGCTGCCAGTGTCGTTGACCAAGGTGACTAGCCTTGTATCTCTTAACTTGTCTCATAACAGCTTCACTGGAAAAATTCCCAAAGGTTTTGAGCTGATCCCTGCTCTTGAAAATCTTGACTTGCATGGTAATATGCTTGAAGGTAATTTGGATGTTGAATTTATGCTTTTATCGAGTGCCAGCTATGTTGATTTAAGTGAGAACATGCTGTCTAGTTCTGATTCCAAGCAGAAGTTTCTACCGCGACTATCTGAAAGTATTAAGCATCTGAATTTAAGCCACAACAAGCTTACTGGATCATTGGCCAGTGGAGTTGCAGAACCGGTTTTTGAAAACTTGAAAGTGTTAGACCTCAGTTACAATCAGTTGGATGGAGAATTGCCTGGATTTGATTTTGTTTATGATCTCCAGGTCCTCAGGCTTAGCAACAACAGGTTTTCAGGATTTATTCCTAATGGCCTACTGAAAGGAGACTCTTTGGTTTTAACTGAACTGGATTTGAGTGCCAACAATCTCTCTGGGCCACTGAGCATAATTACATCAACAACACTTCACTCTCTTAACCTCTCATCAAATCAGTTCACTGGCGAACTGCCACTGCTGACTGGAAGCTGTGTTGTACTTGATTTGTCAAACAACAAATTAGAGGGAAATTTAACTAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGCAATCATTTGATGGGGACCATACCTGAGGAAACTCCTCAATTTTTGCGTCTAAATTATTTGAATTTATCCCATAATTCTCTTAGCAGCTCCCTTCCAAAAGTCTTGACACAGTATCCAAAGCTGATAGTTCTTGACATTAGTTTCAATCAATTAGATGGACGGTTTCTATCTGGTCTGCTCACAATGCCCTCTTTGCAAGAGCTACATCTTGAAAATAACGTGATCTCTGGTTCCATCAATTTCTCATCTTCTCCTGACCAATCCGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTAATGGCTATTTTCCTGATGAGTTTGGGTCATTAAGTGGCCTTAAAGTGCTAAACATTGCTGGAAATAATTTTTCTGGCTCTCTTCCAACCACCATTGCTGACATGAATTCACTTGACTCAATGGATATATCAGATAATCATTTTACTGGTCCTCTACCAAATAACACGCCAAAGGGGCTCCAAAACTTCAATGCTTCTGGAAATGATCTATCTGGACTCGTCCCAGAAGTTTTTAGGAAGTTTCCTAGTTCTTCTTTCTTTCCTGGTAATTCCAAGTTACATTTTCCAAATGGTCCTCCGGGATCAACTGCACCTGCTGAAGGTTCCAAGAAGAAGCATTTGAACACCATTGTTAAAGTAATAATCATAGTGTCATGTGTGGTTGCATTCTTCATATTAATCCTGCTGGCAGTCTTCATACACTATATACGTATATCAAGATCTCCACCAGAATATGATACAAGTAAGGATGTCCACAGGCCTCCTCAACCAATTATCTCGGCTCCTGTTCGAACTACTGATAGGGGTGGTGCTTTGGTTGTTTCAGCTGAGGACCTTGTGGCCACACGCAAAGAGTCACCATCTGAGGTAATCAGCTCTGATGAAAAAATGGCAGCTGTAACGGGGTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCATTCACTGGTGAAAATCTTGCAAGACTAGATACGAGGTCACCAGATCGGTTGATTGGAGAGCTGCATTTTCTTGATGATTCGATAACATTGACACCAGAGGAGCTCTCGAGGGCCCCAGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCCACTCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTAGCAAAACAGAGAAAAGAATTTGTCAAGGAAACCAAAAAATTTGCCAACATCAGACATCCAAATGTTGTGGGATTGAGAGGATATTATTGGGGCCCTACACAGCACGAGAAGCTCATCCTTTCAGATTACATCTCACCAGGAAGTCTTGCAAGCTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCTTTAACTTGGATGCAGAGACTCAAAATAGCAGTTGATGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCGTCCCTCATGGGAACCTCAAAGCCACAAATGTGTTGTTAGACACAACTGATATGAATGCACGTGTCGCCGATTACTGTCTTCACCGGCTCATGACTCAAGCAGGTACTATTGAACAGATTCTCGATGCTGGGGTCTTGGGTTATCGTGCACCCGAGTTAGCTGCCTCCAAGAAGCCAATGCCCTCCTTCAAGTCAGATGTTTATGCTTTTGGAGTTATACTTTTGGAACTTCTAACCGGAAGGTGTGCTGGTGATGTGATATCTAGTGAGGAGGGAGGTGTTGATCTGACAGATTGGGTGAGGTTGCGTGTGGCAGAAGGCAGAGGCTCAGAATGTTTTGATGCTACCTTGATGCCAGAAATGAGCAATCCTGTTGTAGAGAAGGGAATGAAGGAGGTCCTTGGAATAGCCATGCGATGCATTCGATCAGTTTCTGAAAGGCCTGGCATCAAAACTATATATGAAGATCTCTCTTCTATATAG 3186 0.4253 MKPFNFLVLSLYFFSVVGQLPSQDILALLEFKKGIKHDPTGYVLSSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLTKLVKLSMSNNSITGILHGSIAEFKSLEFLDISNNLFSSSLPLEIGMLSSLQNLSLAGNNFSGPIPDSVSEMASIKSMDLSRNSFSGELPVSLTKVTSLVSLNLSHNSFTGKIPKGFELIPALENLDLHGNMLEGNLDVEFMLLSSASYVDLSENMLSSSDSKQKFLPRLSESIKHLNLSHNKLTGSLASGVAEPVFENLKVLDLSYNQLDGELPGFDFVYDLQVLRLSNNRFSGFIPNGLLKGDSLVLTELDLSANNLSGPLSIITSTTLHSLNLSSNQFTGELPLLTGSCVVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLMGTIPEETPQFLRLNYLNLSHNSLSSSLPKVLTQYPKLIVLDISFNQLDGRFLSGLLTMPSLQELHLENNVISGSINFSSSPDQSDLQILDLSHNQLNGYFPDEFGSLSGLKVLNIAGNNFSGSLPTTIADMNSLDSMDISDNHFTGPLPNNTPKGLQNFNASGNDLSGLVPEVFRKFPSSSFFPGNSKLHFPNGPPGSTAPAEGSKKKHLNTIVKVIIIVSCVVAFFILILLAVFIHYIRISRSPPEYDTSKDVHRPPQPIISAPVRTTDRGGALVVSAEDLVATRKESPSEVISSDEKMAAVTGFSPSKQSHFSWSPESGDSFTGENLARLDTRSPDRLIGELHFLDDSITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWMQRLKIAVDVARGLNYLHFDRAVPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLRVAEGRGSECFDATLMPEMSNPVVEKGMKEVLGIAMRCIRSVSERPGIKTIYEDLSSI 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01204 1061 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 355 613 - -
Vian6g01204 1061 Pfam Leucine Rich Repeat 191 211 IPR001611 GO:0005515
Vian6g01204 1061 Gene3D Transferase(Phosphotransferase) domain 1 858 1061 - -
Vian6g01204 1061 FunFam Leucine-rich repeat receptor-like protein kinase 764 856 - -
Vian6g01204 1061 PANTHER OS07G0626500 PROTEIN 8 1061 - -
Vian6g01204 1061 Gene3D Ribonuclease Inhibitor 259 618 IPR032675 -
Vian6g01204 1061 SUPERFAMILY Protein kinase-like (PK-like) 782 1058 IPR011009 -
Vian6g01204 1061 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
Vian6g01204 1061 SUPERFAMILY L domain-like 386 598 - -
Vian6g01204 1061 ProSiteProfiles Protein kinase domain profile. 779 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01204 1061 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Vian6g01204 1061 Pfam Protein tyrosine and serine/threonine kinase 783 981 IPR001245 GO:0004672|GO:0006468
Vian6g01204 1061 SMART LRR_typ_2 93 116 IPR003591 -
Vian6g01204 1061 SMART LRR_typ_2 526 549 IPR003591 -
Vian6g01204 1061 SMART LRR_typ_2 189 212 IPR003591 -
Vian6g01204 1061 SMART LRR_typ_2 503 525 IPR003591 -
Vian6g01204 1061 SMART LRR_typ_2 290 312 IPR003591 -
Vian6g01204 1061 SMART LRR_typ_2 477 500 IPR003591 -
Vian6g01204 1061 SMART LRR_typ_2 141 165 IPR003591 -
Vian6g01204 1061 SMART LRR_typ_2 429 452 IPR003591 -
Vian6g01204 1061 SMART LRR_typ_2 313 337 IPR003591 -
Vian6g01204 1061 FunFam Pollen receptor-like kinase 1 857 1061 - -
Vian6g01204 1061 Pfam Leucine Rich repeat 292 306 IPR001611 GO:0005515
Vian6g01204 1061 Pfam Leucine Rich repeat 361 377 IPR001611 GO:0005515
Vian6g01204 1061 FunFam LRR receptor-like serine/threonine-protein kinase GHR1 20 264 - -
Vian6g01204 1061 SUPERFAMILY L domain-like 45 379 - -
Vian6g01204 1061 Gene3D Ribonuclease Inhibitor 188 258 IPR032675 -
Vian6g01204 1061 Gene3D Ribonuclease Inhibitor 22 187 IPR032675 -
Vian6g01204 1061 Gene3D Phosphorylase Kinase; domain 1 772 856 - -
Vian6g01204 1061 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01204 Vian-Chr6 29695908 29700017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01204 9 1009 Receptor kinase-like Gene Family AT4G36180 27.797 9.91e-80 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian6g01204 PK_Tyr_Ser-Thr 1.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01204 - - gmx:100793639 1917.89