Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01193 ATGGATTCTTCAATGGCAAGTGCTGGTGGTTCTGCTGATGAAGGTTCTCAAAGCCATAACAATGGAAGGAAAACCTCCTACAAACGTCTCTCTTCTTCTCAAACATCAAGACTTGAAAGGATACACACAGAAAATGTTACAATGCAAGAGGCCTTGAAGAGTATGCTTTGCCCATCTTGTGGGGGACCACCGTGTCTTGAAGGAGATCGTGAACATGCTATCCATAATATGAGACTTGAAAATATGCACCTAAAGGAAGAGCATGAGAAGGTGTCTCGTCTACTTTCGAGGTACTTGGAGAGCCAGATGTTACCACCTGATCAGTTCCAACAGGGTTTTTTTCCCATCATAGGATCAAGTTCAAATGCTGCAGGACTTGGAAATCCACTGAACCAAGTGATCGGTGGAAGTTCGAGTCATGATCCAAATCTTGCTTTGCATATGATGGATGGTGGCCATAACTTATTTGCGAGTGAAGGCATAGAAAAAAACCTTATGGCTAAGGTTGCTGCTACCGCAATGGATGAGCTAGTTAGGCTTGTTCGGATTAATGAGCCCTTTTGGATTAAGTCCTCATCTCAAGATGGCAAGCTCTGTCTACTGCTTGAAAACTATCAAAAAATGTTCCCAAAGACCAAACATTTCAAAGGGCCAAACGTGCGTATTGAAGCAACAAAAGAATCAGGAATAGTGAACATTAATAGCCTTCAGCTTGTTGACATGTTTCTTGATTCGGACAAATGGGTGAATTTGTTCCCAACAATTGTCTCAAAAGCAGAAACACTGAAAGTAATCGAAAGAGGTTTGCCAGGAAACCGAAGTGGAGCCTTGCAGCTGATGTTCCAGCAAATGCATGTTCTTTCACCCTTTGTGCAACCTCGTGAATTTCAATTCCTTCGTTTCTGTACACAAATTGAAGAAGGCCTGGTGATAGCAGATATATCATTTGATTCCTTCCAGCAAAAACCCTCTATTTTTCAGTCTTGGAAACATCCCTCTGGATGCTTGATCCAGGAATTGCCTAATGGCTGCTGCATGGTTACTTGGGTTGAGCACGTGGAAGTGGATGATAAAATCCAAACACATCCGCTGTACAAAGATATTATTGTTAAGGGCGTTGCATACGGAGCTGAAAGGTGGATTATGGAACTTCAAAGAATTTGCGAGAGATTTGCTGCCTTTTATGTTGAAAAGATACCTGATCATGACGCTGCAGGAGTGATCAATTCTCTTGAGGGAAGGCGAAGTATAATGAATTTTTCTCATCGTATGCTGAAAATCTTCTGTGAAAGTATAACCATGGCAGATGGCTTGGACTTTCCGCTTTGTGATCTGGCGAACACTAGTGGGGTTAGGGTCTCTATTCGCGAAAGCAAAATCAATGGACAGCCAAGTGGCATGATTGTTGCAGCTGCTACCTCCATTTGGCTTCCTCTCCATTATATGAAAGTTTTTGAGTTCTTCCTAGATGATAAAAACCGTGCTCAGTGGGATGTTCTTACCTGTGGAAATCAGGCACACAAGGTGGCACACATCTCAAATGGAATTCACCCTGGGAACTGTGTATCTGTTATTCGGGACTCGTCTTTTGGTTATGCAGACTTTCTCTGCATTGCTCAAGGACAAAACATTGCTTTGTTTCCTTTGCGTTTCATGACAAACCAGTTTGCTTGA 1674 0.4247 MDSSMASAGGSADEGSQSHNNGRKTSYKRLSSSQTSRLERIHTENVTMQEALKSMLCPSCGGPPCLEGDREHAIHNMRLENMHLKEEHEKVSRLLSRYLESQMLPPDQFQQGFFPIIGSSSNAAGLGNPLNQVIGGSSSHDPNLALHMMDGGHNLFASEGIEKNLMAKVAATAMDELVRLVRINEPFWIKSSSQDGKLCLLLENYQKMFPKTKHFKGPNVRIEATKESGIVNINSLQLVDMFLDSDKWVNLFPTIVSKAETLKVIERGLPGNRSGALQLMFQQMHVLSPFVQPREFQFLRFCTQIEEGLVIADISFDSFQQKPSIFQSWKHPSGCLIQELPNGCCMVTWVEHVEVDDKIQTHPLYKDIIVKGVAYGAERWIMELQRICERFAAFYVEKIPDHDAAGVINSLEGRRSIMNFSHRMLKIFCESITMADGLDFPLCDLANTSGVRVSIRESKINGQPSGMIVAAATSIWLPLHYMKVFEFFLDDKNRAQWDVLTCGNQAHKVAHISNGIHPGNCVSVIRDSSFGYADFLCIAQGQNIALFPLRFMTNQFA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01193 557 ProSiteProfiles START domain profile. 159 393 IPR002913 GO:0008289
Vian6g01193 557 Pfam START domain 169 390 IPR002913 GO:0008289
Vian6g01193 557 Gene3D - 166 375 IPR023393 -
Vian6g01193 557 SUPERFAMILY Bet v1-like 161 392 - -
Vian6g01193 557 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 36 528 IPR042160 -
Vian6g01193 557 MobiDBLite consensus disorder prediction 1 41 - -
Vian6g01193 557 CDD START_ArGLABRA2_like 163 389 - -
Vian6g01193 557 SUPERFAMILY Bet v1-like 413 523 - -
Vian6g01193 557 SMART START_1 168 390 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01193 Vian-Chr6 29546410 29552003 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01193 39 540 Homeobox Transcription Factor Family AT1G73360 40.347 1.83e-129 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01193 K09338 - gmx:100795075 718.768