Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01183 ATGATTCTGCAAATACCATTTTTCGTCATCATCACGATGTTCATAACATTGCCTCCTATATATGCTAAGCCATATTATTATTATAAATTGCCATATTTTGAACTGCAAGATTCCAAAGAAGGGTATATTATAGCAAAACCTGGGTGTAGTTTCAGATGTGGAGGTGTTGACATCTCGTACCCTTTTGGAATGAAAGATCCGAAATGCTACGGAGGCAAGTGGTTTGAAGTAGAATGCAGAGAAACTTCCCGCGGCCAAAAACCCTTCCTAAAGTCTTTAAATCTGGAGGTGATGGGAGTTGGCTTGAATATGGTTCATATCAAGAATCCGATTTTCTATTGGAACTGCCCAGGCAGAAGAGCAACGCCAGAAGTAATAAACCTGAGAGGAAGCCCTTTTGTGTATTCCCGGGTAGCCAACACGTTTGTGGCCGTTGGTTGCAACAACCTTGCCTTTTTGCAGTCCAATGGGTCCACTGTTGCTTGTTGTGCGTCCATGTGTGATGACAGTGAAGAAGTCAATGAAAACTTCAACTTGGTAGGAAAATATGGTTGCAGTGGCAGGTACTGCTGTGAAACTTCACTGCCCAAGTATCTTTCAGAATATAACGCAACACTTCAACATTTTAACACCGAAAACAATAATACTGTGAGTGAACCGTGTACTTATGCGTTCATTGCATATCCATACTCGTACCAGCAAGATACGTTTTCGATTAACGATACGGATTATATTGAGGCAGTGCTTGAGTGGGAGATATTGGACAACACGCTTGACAATTCTACCCGTCAATCCCTTTCAGAATTAGATTACGTCACTTGTAATCGCTCTAATGTTGTATCTTCGCAAAACACAAGCTCTGGTTGGAGATGCGACTGTTTAGAAGGCTTCTATGGCAATCCCTACGTTGCAGGAGGCTGCACTGCCATCCCAGATTATTACAAGCACAGTCAAGCGAAGAAGTGGGCTATAGTAGGAGTTTCGTCAAGTCTGGGATCTATCATTTTTCTCCTTTGTCTATGGTTGTTGTATAAGGTTGCAAGGAAGCGAGTGATAGAGAAACGTAAACAGAAGTTCTTCAAAAAGAATGGTGGTTTGTTGTTGCAACAAAGAATGTCATCTAATGAAGCTAATGTGGACAAAGCTATTCTCTTTAGCTTGGATGATTTAGAGAAAGCCACTGACAACTTTAACATGGATAGAGTTCTGGGAAAGGGAGGGCAAGGTACGGTTTACAAAGGAATGCTAGTAGATGGTAGAATTGTTGCAGTGAAAAAATTTAAGGTGGAAGGAAATATTGAAGAGTTCATCAATGAGTTTGTCATTCTCTCACAAATCAACAACAGAAATGTGGTCAAACTGTTAGGATGTTGTTTGGAGACAGAAATTCCTCTACTTGTTTATGAATTCATTCCTAATGGTAATCTCTTTGAATATTTGCATGACCAGACAAAGGAGTTATTACCAATGACTTGGGAGATGTGTTTGAGAATTGCCACTGAGATCGCAGGAGCTCTCTTTTACCTGCACTCGGTTGCATCTAAACCCATTTATCATAGAGATATCAAATCCACAAATATACTATTGGATGAAAAGTATAGGGCAAAAATTGCAGATTTTGGAACATCCCGGGTAATTTCTATTGAAGCTACTCATCTTACAACAGTTGTTCAAGGTACCTTCGGTTATTTGGATCCTGAATATTTTCACACTAGTCAATTTACAGAGAAAAGTGATGTCTATAGTTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGCCAAAAGGCAATATCACCAGCAAGATCTGGAGAGTTCAAGAGTCTAGCATCATATTTTGTTGAGTGTCTGGAGGAGGACAATCTGTTTGACATTATTGACAAAAGAGTTATGAAAGAAGCAGAGAAGGGACAAATCATTGCCGTTGCTAATCTTGCAAATAGATGCTTAGAGTTGAATGGAAAGAAACGTCCAACTATGAAAGAGATCACATTTGAATTAGAAGGGATTCATGGATTGGTCAGGAAGTGTAATGCAGAGAAAAAAGGTGAGGAAGTTGAGCTTGCACGAGTTGGCATCCTTGGGATGGATATTCTACGTCAAAGTCATGGTACTCAAAAGGTTGTACCTATGGTACAATAA 2139 0.3983 MILQIPFFVIITMFITLPPIYAKPYYYYKLPYFELQDSKEGYIIAKPGCSFRCGGVDISYPFGMKDPKCYGGKWFEVECRETSRGQKPFLKSLNLEVMGVGLNMVHIKNPIFYWNCPGRRATPEVINLRGSPFVYSRVANTFVAVGCNNLAFLQSNGSTVACCASMCDDSEEVNENFNLVGKYGCSGRYCCETSLPKYLSEYNATLQHFNTENNNTVSEPCTYAFIAYPYSYQQDTFSINDTDYIEAVLEWEILDNTLDNSTRQSLSELDYVTCNRSNVVSSQNTSSGWRCDCLEGFYGNPYVAGGCTAIPDYYKHSQAKKWAIVGVSSSLGSIIFLLCLWLLYKVARKRVIEKRKQKFFKKNGGLLLQQRMSSNEANVDKAILFSLDDLEKATDNFNMDRVLGKGGQGTVYKGMLVDGRIVAVKKFKVEGNIEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQTKELLPMTWEMCLRIATEIAGALFYLHSVASKPIYHRDIKSTNILLDEKYRAKIADFGTSRVISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKAISPARSGEFKSLASYFVECLEEDNLFDIIDKRVMKEAEKGQIIAVANLANRCLELNGKKRPTMKEITFELEGIHGLVRKCNAEKKGEEVELARVGILGMDILRQSHGTQKVVPMVQ 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01183 712 Pfam Wall-associated receptor kinase galacturonan-binding 49 93 IPR025287 GO:0030247
Vian6g01183 712 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 45 674 IPR045274 GO:0007166
Vian6g01183 712 FunFam Wall-associated receptor kinase 2 471 689 - -
Vian6g01183 712 Pfam Protein tyrosine and serine/threonine kinase 398 665 IPR001245 GO:0004672|GO:0006468
Vian6g01183 712 SUPERFAMILY Protein kinase-like (PK-like) 377 666 IPR011009 -
Vian6g01183 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Vian6g01183 712 Gene3D Phosphorylase Kinase; domain 1 362 470 - -
Vian6g01183 712 FunFam Wall-associated receptor kinase 2 367 470 - -
Vian6g01183 712 Gene3D Transferase(Phosphotransferase) domain 1 471 688 - -
Vian6g01183 712 SMART serkin_6 397 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01183 712 CDD STKc_IRAK 403 669 - -
Vian6g01183 712 ProSiteProfiles Protein kinase domain profile. 397 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01183 Vian-Chr6 29440672 29443441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01183 49 708 Receptor kinase-like Gene Family AT1G69730 43.069 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vian6g01183 PK_Tyr_Ser-Thr 9.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01183 - - gmx:100798794 959.133