Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01162 ATGTGCAGCTGCATCTTTGGGCCAATAATCATGGACAATTACCAAGGTGATTTAACTGACATAGTCCGAGCCAGTGGTGGAGCATATGGTGGTGGTGGTGGTGGCAGCAGCAGCTGCAGCACAGGCACTTCATCTGCTGAATTACCTACCACATCTCATCACCATACTATTACTCACACCCTCTCTCGTAATGATCACTGGCACCAACACTTCTCTTCTTCTTCTTCTTCTTCTGATCCCATCACCTTCTCTTCTGTGCTTCAAGACCCCAGAGGACTCACCAACTTTGGTGATCCCTTCTCCACCATGAGAGATCCCTTCCTTCAGGAGCTTGACATGCCTTCCGCTTCTTCCTACTTCACTGGGGGCTTGGAAGAAGCAGCTGCGAGTTTTGGTGCTTCTGCTGTTAGTACTAGTACTAATACTAATACTAGCACCACTGTTTTTGCTGCACACAAGATTCTCGAGGAGCATGACATGAGAAGACCTTGTAAAAACATATTCTCCAACATGATTCAGATCTCTCCCAATGCAAAGTTACCGGTCTCACCCTATGATTCCACCACAGCGGTGGCACCTTCTCCAAGGGCAATTAAACCTCCTGCTGTTGTTTCACCCAACATGGTTACTGCGAACTCCTCCAAGGATTGCCTTGTGGACACCACAGGAGTGCAGATCTCGTCTCCACGGAATCCGGGTCTTAAACGAAGGAAGAACCAGGCCAAAAAGGTTGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTTGTTCCGTCAGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTACTACAGATGCAGCAGCTCAAAGGGTTGCTCTGCGAGGAAGCAAGTTGAGCGGAGCAGAACAGACCCAAACATGTTGGTTATTACATACACATCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTGGCTGGTTCGACCAGGTCACAGCCATCCAAGAACAATGCTGGAAATTCAAAGAGCTCAGAAGGGTCAAACCCCCAAAAGAGTACAATATCAAAAGCAAAGGATGAGCAGCAGCAGCAGGAGAGCAACAACAGTGAGGGCAATATGTCTCCAGTTGTTGCTGGGAACTCATCAGCGAACAGTGCATCTGTGAAGGAAGAGAATATGGAGGACATAGAGAAGCAGTTTGAGATGGATGAGGGAGAGTTCAGTGATGGACTCCCTTACAAGCCTTGTTTGATGGATCAGAGTAATAATCAATCTGAGGACTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCGCTGGATATTCTGTTTACCCAAGGTTTTGGTGCGGCTGATGATCAAAGGGAAGAATCCAAAGCCTTGGATCCATTCCATCTGTTTGACTGGTCAGGAGACAACAATACCAGCACAAACACCGGTTCATTTGAAGAGCCTAATGCAAAGAGAAGGTTATAA 1491 0.4715 MCSCIFGPIIMDNYQGDLTDIVRASGGAYGGGGGGSSSCSTGTSSAELPTTSHHHTITHTLSRNDHWHQHFSSSSSSSDPITFSSVLQDPRGLTNFGDPFSTMRDPFLQELDMPSASSYFTGGLEEAAASFGASAVSTSTNTNTSTTVFAAHKILEEHDMRRPCKNIFSNMIQISPNAKLPVSPYDSTTAVAPSPRAIKPPAVVSPNMVTANSSKDCLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNAGNSKSSEGSNPQKSTISKAKDEQQQQESNNSEGNMSPVVAGNSSANSASVKEENMEDIEKQFEMDEGEFSDGLPYKPCLMDQSNNQSEDFFAELGEIEADPLDILFTQGFGAADDQREESKALDPFHLFDWSGDNNTSTNTGSFEEPNAKRRL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01162 496 MobiDBLite consensus disorder prediction 472 496 - -
Vian6g01162 496 Pfam WRKY DNA -binding domain 265 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01162 496 ProSiteProfiles WRKY domain profile. 258 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01162 496 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 17 448 IPR044810 GO:0003700
Vian6g01162 496 SMART WRKY_cls 263 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01162 496 MobiDBLite consensus disorder prediction 288 398 - -
Vian6g01162 496 SUPERFAMILY WRKY DNA-binding domain 261 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g01162 496 MobiDBLite consensus disorder prediction 474 489 - -
Vian6g01162 496 MobiDBLite consensus disorder prediction 307 394 - -
Vian6g01162 496 Gene3D WRKY domain 237 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g01162 496 FunFam probable WRKY transcription factor 14 237 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01162 Vian-Chr6 29227747 29230541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01162 1 457 WRKY Transcription Factor Family AT2G34830 42.766 2.65e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian6g01162 WRKY 2.9e-25 CL0274