Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01153 ATGGCAACCGCGGAGTCAGCTCCTGCGGGGCTTGGCCCTAGATATGCACCCGATGACCCTACTCTTCCACAACCTTGGAAGGGATTGATTGATGGCAGCACTGGTTTGTTGTATTATTGGAATCCCGAAACTAATGTTACCCAATATGAAAAACCTGCCCCCGTAACACCACCCTTGCCTGCACCTGTGGCTTCTGCACCGAACTTGGCACCAATACCTGTGACTCACACAATGCAGGTTGGTGGGATGGGGCCGCAGCATGGACAGCAGTTAATGCAAGGGCAACCCTCGCAACAGCAGGTAGGTCACCTTGCCCAACAGCACGGGCAATCTATGCTACCTCAGCAACAGCAGCAGAGTCCCCATATGGGGCAAACCACTCAGCAGAACCCCTCTCAGGGTGCTCAGTCTGCGCCGCAGCAGAACTCACTGATGACACAGTCAGTGCCGCAGCCAGGGTTACATCAAGCCAGACAGCAAATGATGCAGCCCCAGGGGCAGCAAATGATGCAGCCCCAGGGGCAGCAAATGATGCAGCAGCCTCAAGGACAGCAAATTCAACATCAGATACCGCCACATGCAATCCATTCCCAGCATTTTGGGCAAGGAATACCTCAGGATCATGGCTCACATATTGCACCTCCACAAGTACATCAGTTTCCTACCCAAAACATGCACTATATGTCATATCAGCAAAACATCATTACACCCAGGCAACCAAACTCTCAACACATTCAGCCAAACACTGTCTCACCTGGGCAACCTAACCCCCAACAGGTTCAGCATAACATGCATGGTCAACCCTTCGAAAATCAACAAACAACATTTCCAAAGGTAGAGGAAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACTTTCACCATCCCAGTATCCGCAGAGGAGTACCTTGCCTGCTCCGAATAATCAGAACCTTCCTCCTGACACAGCTTTTGATCAAATGCCTAATGTAAGTGTCAATGCTGGTCAGCCTCAGCAATTTAGGACTGCCTTATCAGGCAGTGTGCAGAAGTCGCCATCTGCAATGCCGTTGCAGCAGGGTGGATCTGTTTTATATTACCAACATGGTCCTAACTTTCATAAGCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGCCAAAAAATGAGTCAGGAGGACAATTTACGTAGCAGAGAAGGAAATGAATATTACTATAATTCTAACAAAGATATGTCCACAATGGGTCGTCGGCAACCAGATATGACTCAAATACCAGTTCCAAGAAATCAGCAGGATATGAGGATCGGCAATACTCCTTTTCAAAACGTAATGCCAAGTGGGAATGGAAGTGGTATTGCTGGGAATGCTATGCCTAGCATGTTTGTTCCTCCAATGGGAGGACCTTCACCTCTTTCTAATAACGCTTTAATGAGACCTTCTTACATGGGATCTTCTGATGCAAGTGATCTTTCACCGGCTGAAATTTACTGCCAGCAACATGAAGTTACAGCAACGGGTGGTGACATTCCCCCTCCTTTCATGACATTTGATGCTACTGGATTCCCTCCAGAGGTATTGAGAGAGGTGCGATATCTGCTCCAGAGCAGGAGCATATGTCGGTGGATGGCCCTCCATTCTTCAAATTTCTGTGACCTGGGATTTGTTGCTTATTGGCTCCGCCTCTTATGTCTTTTTTGCCTTTTTTATTTGCCTCAAGTTGCTTCAATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAGGGTAGAGACATAGTAGCAATTGCCAAAACTGGCTCTGGGAAAACATTGGGTTACTTAATTCCTGCCTTCATTCTTCTTAGACAGCGACACAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGGGAACTTGCAACACAGATCCATAATGAGGTTATCAAGTTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAGGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTACTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCCGGAAGATTGTGGATGAGATTCCTGCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGTGAACTTCTTGTGAATCCTGTCCAGGTTAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCCATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAGCAGAGGCGTTTGGAACAGATCCTCAGATCCCAAGAACGAGGTTCGAAGGTCATAATATTTTGCTCCACGAAGAGGTTATGTGATCAGCTAGCTCGTAATATTGGCCGCACTTTTGGGGCTGCTGCAATTCATGGAGATAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTAATAAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACCTTTTTTTCTGAGCAGGACTGGAAACACGCTGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGAACGGGGTGGGATGAGTAGGTTTGATTCTGGTGGTGGGCGTTGGGAGACTGGTGGTCGTGGTAGTATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGAATGAGGGATGGTGGCTTTGGTGGTCGTGGGGGTGGCATGAGGGATGGTGGTTTTGGGGGGCGTGGCAGTGGCATGAGGGATGGTGGCTTTGGTGGTCGAGGTGGAGGCCTGAGGGATGGAGGATTTGGTGGACGTGGTGGTGGTGGTTTTAGTGGACGTGGTGGCCCGAGGGATGGAGCTGGTGGGAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTAGGGGATCTAGTGGTCTTCGTGGTGGTCATGGTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGTGGACAGGGGCGTGGACGTGGCCGATTTGACAACAGAAGGGATGTTTCTTACAAAAGTAGAGGCAGAAGTTATAGTCGAAGCCCAGAAAGAGTCCGAACATGGGATTATAGTAGTAGTAGCAGAAGTCGTAGTAGAAGCAGGAGTTGGAGCAGGGATAGAAGTCGAAGTAGAAGTAGAAGTCGCAGCTGGTCTCGTGGCCGAAGTTACAGCCGAAGCCGTACCCGCAGCCGGAGCCGGAGCCGGAGTTATGACAGGCGGGATAGGTCAGTTCAACAGCTTCCTGATCGAAAGGATAGGCCACACGAAGTGGGAACTTCTGATCCAAGAATGCTTCCCTTGTCTCCTGGTCCTGGCAAACAGGAGAATTCCTCTTTGGGAAGTGAGCAAGGGCAGCAGCAATCTGTTGTTGGTAGCTCTGATCCAGGGAATCCAGAAGCTGTACCAGACCTTAGTCACGAATCAGCTTCTGGTGTTTAG 3708 0.4871 MATAESAPAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPVTPPLPAPVASAPNLAPIPVTHTMQVGGMGPQHGQQLMQGQPSQQQVGHLAQQHGQSMLPQQQQQSPHMGQTTQQNPSQGAQSAPQQNSLMTQSVPQPGLHQARQQMMQPQGQQMMQPQGQQMMQQPQGQQIQHQIPPHAIHSQHFGQGIPQDHGSHIAPPQVHQFPTQNMHYMSYQQNIITPRQPNSQHIQPNTVSPGQPNPQQVQHNMHGQPFENQQTTFPKVEEAEFKNGSQVGLSPSQYPQRSTLPAPNNQNLPPDTAFDQMPNVSVNAGQPQQFRTALSGSVQKSPSAMPLQQGGSVLYYQHGPNFHKQMSPGMMHGHPSNVHPAGQKMSQEDNLRSREGNEYYYNSNKDMSTMGRRQPDMTQIPVPRNQQDMRIGNTPFQNVMPSGNGSGIAGNAMPSMFVPPMGGPSPLSNNALMRPSYMGSSDASDLSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEVLREVRYLLQSRSICRWMALHSSNFCDLGFVAYWLRLLCLFCLFYLPQVASIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIASELLVNPVQVNIGSADELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRFDSGGGRWETGGRGSMRDGGFGGRGGMRDGGFGGRGGGMRDGGFGGRGSGMRDGGFGGRGGGLRDGGFGGRGGGGFSGRGGPRDGAGGRGDFFPGRGNRGRGSSGLRGGHGGWGRGERGMDDRGQGRGRGRFDNRRDVSYKSRGRSYSRSPERVRTWDYSSSSRSRSRSRSWSRDRSRSRSRSRSWSRGRSYSRSRTRSRSRSRSYDRRDRSVQQLPDRKDRPHEVGTSDPRMLPLSPGPGKQENSSLGSEQGQQQSVVGSSDPGNPEAVPDLSHESASGV 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01153 1235 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 489 938 - -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 1194 1217 - -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 941 1235 - -
Vian6g01153 1235 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Vian6g01153 1235 MobiDBLite consensus disorder prediction 288 323 - -
Vian6g01153 1235 Gene3D - 769 940 IPR027417 -
Vian6g01153 1235 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 794 938 IPR001650 -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 74 189 - -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 1 24 - -
Vian6g01153 1235 FunFam ATP-dependent RNA helicase RhlB 769 941 - -
Vian6g01153 1235 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Vian6g01153 1235 CDD SF2_C_DEAD 779 908 - -
Vian6g01153 1235 Pfam Helicase conserved C-terminal domain 791 899 IPR001650 -
Vian6g01153 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 914 IPR027417 -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 239 270 - -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 1122 1136 - -
Vian6g01153 1235 CDD DEADc 578 765 - -
Vian6g01153 1235 Gene3D - 489 768 IPR027417 -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 287 323 - -
Vian6g01153 1235 SMART helicmild6 815 899 IPR001650 -
Vian6g01153 1235 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Vian6g01153 1235 MobiDBLite consensus disorder prediction 1107 1121 - -
Vian6g01153 1235 Pfam DEAD/DEAH box helicase 584 754 IPR011545 GO:0003676|GO:0005524
Vian6g01153 1235 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 711 719 IPR000629 -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 1157 1182 - -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 1068 1106 - -
Vian6g01153 1235 SMART ww_5 21 54 IPR001202 GO:0005515
Vian6g01153 1235 Pfam WW domain 22 52 IPR001202 GO:0005515
Vian6g01153 1235 CDD WW 23 54 IPR001202 GO:0005515
Vian6g01153 1235 MobiDBLite consensus disorder prediction 1137 1156 - -
Vian6g01153 1235 SMART ultradead3 579 782 IPR014001 -
Vian6g01153 1235 MobiDBLite consensus disorder prediction 82 189 - -
Vian6g01153 1235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 591 765 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01153 Vian-Chr6 29129421 29136328 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01153 575 939 Eukaryotic Initiation Factors Gene Family AT3G19760 33.696 1.74e-62 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01153 K12823 - gmx:100807830 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01153 6 29129421 29136328 Vian6g01153 6 29129421 29136328 ECH