Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01148 ATGGTCGTAGAAACGGAAATCATCTGCCAGAAGAGCATGCCCATGCTGGACGTGAAGTACCACCTTTGCGTGGCGCAAGAACACGGTGTTAAGGTTGATGTTTCGCCCACCTCCAACGTTGTTCCCATCTTCGGTCACGTGAGGGTTGCCGCCGAATCTGTTTCTACGGAAACGACTCGTTTTGAATCGGTGGGTACTTCTGGATTTGGGGGCGGGGAGATTAAATTTTCGTGTGGAATGGTTGTGGGGGTTCCAGAAGCAGCTGTGAGTTTGCCTGAGATGATTGGAGATTCAAGTTTAGAGGCTCCTGCTACTAAGTTTACACCAGATGTGCGATCTGGCTGTTGTGCTGATATTGGACCCAGGGGGTCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTGCGCACCTTGGATTCAACTTTGAGCATCCTATGGCAAGTGCTTTTTATGCAGTTTTTGATGGGCATGGAGGGCCAGATGCTGCTGCCTTTGTTAAAAACAACGCTATGAGATTATTTTTTGAAGATGCTCATATGCTGCAATCATACGATGCTGATGCGCTTTTTCTGAAGAGGTTGGAAGATTCTCATCGAAAGGCGTTTTTGGGAGCAGACATTACCTTGGCTGATGAACGAAGTGTTAGTAGTTCATGTGGAACAACGGCGTTGACTGCTCTTGTACTCGGGAGGTATTTGATGGTTGCTAATGCTGGGGACTGTAGAGCTGTTCTTTGTAAGCGAGGCGTAGCTGTTGATATGTCCCAAGATCACAGACCGAGTTATTTACCAGAACGCAGGAGAGTGGAGGAGATGGGTGGTTATATTGATGATGGGTATCTCAATGGTCATCTTTCTGTGACTCGTGCTCTTGGGGATTGGGACTTGAAAAATGCACTTGGTTCTGTGTCGCCTCTTATTGCCGACCCGGATGTTCAGGTGGTCACATTGACAGAGGAGGATGAGTTCTTGATCATTGGTTGTGATGGTATTTGGGATGTACTGTCAAGCCAGGATGCTGTTAGTCTGGTGCGGCGTGGATTAAGAAGGCATGACGATCCTGAACAATGTGCCAGAGAGCTAGTTAAGGAAGCTTTGCGCCTACACTCCTCAGATAATCTTACTGCGATTGTTATCTGCTTGTCCCCTGTCCAGATTGTTGAGTCTTGTCTACCCCAAAGGCGAAGATTCAGATTTTGCTCCCTGTCTGAAGAGGCCCGGAACAGGTTGAGGAGTTTGCTAGAGGGAAACTGA 1257 0.4765 MVVETEIICQKSMPMLDVKYHLCVAQEHGVKVDVSPTSNVVPIFGHVRVAAESVSTETTRFESVGTSGFGGGEIKFSCGMVVGVPEAAVSLPEMIGDSSLEAPATKFTPDVRSGCCADIGPRGSMDDEHIQIDDLAAHLGFNFEHPMASAFYAVFDGHGGPDAAAFVKNNAMRLFFEDAHMLQSYDADALFLKRLEDSHRKAFLGADITLADERSVSSSCGTTALTALVLGRYLMVANAGDCRAVLCKRGVAVDMSQDHRPSYLPERRRVEEMGGYIDDGYLNGHLSVTRALGDWDLKNALGSVSPLIADPDVQVVTLTEEDEFLIIGCDGIWDVLSSQDAVSLVRRGLRRHDDPEQCARELVKEALRLHSSDNLTAIVICLSPVQIVESCLPQRRRFRFCSLSEEARNRLRSLLEGN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01148 418 Pfam Protein phosphatase 2C 122 374 IPR001932 -
Vian6g01148 418 FunFam Probable protein phosphatase 2C 22 97 385 - -
Vian6g01148 418 SUPERFAMILY PP2C-like 108 384 IPR036457 -
Vian6g01148 418 PANTHER PROTEIN PHOSPHATASE 2C 101 380 IPR015655 GO:0004722|GO:0006470
Vian6g01148 418 ProSitePatterns PPM-type phosphatase domain signature. 151 159 IPR000222 GO:0043169
Vian6g01148 418 CDD PP2Cc 111 382 IPR001932 -
Vian6g01148 418 ProSiteProfiles PPM-type phosphatase domain profile. 112 382 IPR001932 -
Vian6g01148 418 Gene3D - 99 386 IPR036457 -
Vian6g01148 418 SMART PP2C_4 102 380 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01148 Vian-Chr6 29070346 29072176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01148 1 417 PP2C-type Phosphatase Gene Family AT1G48040 54.632 1.47e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01148 K14803 - gmx:100798957 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01148 6 29070346 29072176 Vian6g01148 6 29070346 29072176 ECH