Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01126 ATGGCGGAGGAGAAAAGAGAGGAAGAAGCGCACCCCAACAACGAACCATCCACCACCATGGCATTCTCCGACGAGATTCCCAACAACTTCACTTTCCCTTCCCAACCACTCACCATCTTCGACGCCATGCCGCCGCCGCCCTTCTCTTCTTCCTGCGACCACAAGGCCTCGCCCTTCGGCTTCCTCGACCTGCTCGGCGTGCACGACTACCACGCTCCGCTATTCGATTGGCCCCCCTCCGCTGCGCCGTCGCGGGCGAGCTCCAACGTGCCGGACTCCTCCGAGGTGCTGAACACTCCCGCGTCGCCCAACTTGTCGTCGATTTCGTCGTCTTCGAATGAGGCCACCGCCACCGCCACGACCGCCACCAGGGCGGAGCAGAGTGGTAAAGGTGGGTTTGAACACGAGGAAGCCGAAGCAGAGGAGGAAGAAGAAGGTGGTAATGGAGGCAGAGAGGACCAGGATCAAGACAAGACTAAGAAACAGTTGAAAGCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCACCACCGGTTGCGGCGTAAAGAAGCGAGTCGAGCGTTCCTCCGACGACCCTTCCATCGTGGTTACCACTTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCTCGGGCCAGCTTCGGGTTCGTGAACGAGCCTGGTGGGTTGGGACATTCCGGCTCCTCACACTTCGTCCTGCCACATCCACATCAACACCAACACCAACACCAACACCAACACCAACACCAAGCTTCGCCTTTGATATATAACTCCAACCCTCCTTTTGTAAACTCCGCCAGTAACTTCATGAACACGACGTCGTTTGGTGGGTTTGGTCAGGACCACGCGAACCGTCGAGGATTCGGGCATGAGGCTTTGTTGAGGGACAATGGGTTGCTTCAGGACATTATTGTGCCATCGCAGGTGAGGAAGGAGGAGAAGGATTGA 1074 0.5615 MAEEKREEEAHPNNEPSTTMAFSDEIPNNFTFPSQPLTIFDAMPPPPFSSSCDHKASPFGFLDLLGVHDYHAPLFDWPPSAAPSRASSNVPDSSEVLNTPASPNLSSISSSSNEATATATTATRAEQSGKGGFEHEEAEAEEEEEGGNGGREDQDQDKTKKQLKAKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTTTGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPASSRASFGFVNEPGGLGHSGSSHFVLPHPHQHQHQHQHQHQHQASPLIYNSNPPFVNSASNFMNTTSFGGFGQDHANRRGFGHEALLRDNGLLQDIIVPSQVRKEEKD 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01126 357 MobiDBLite consensus disorder prediction 82 127 - -
Vian6g01126 357 MobiDBLite consensus disorder prediction 1 42 - -
Vian6g01126 357 MobiDBLite consensus disorder prediction 81 176 - -
Vian6g01126 357 MobiDBLite consensus disorder prediction 14 36 - -
Vian6g01126 357 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01126 357 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01126 357 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g01126 357 FunFam WRKY transcription factor 57 175 249 - -
Vian6g01126 357 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian6g01126 357 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian6g01126 357 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 291 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01126 Vian-Chr6 28796606 28798484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01126 159 354 WRKY Transcription Factor Family AT5G49520 56.585 3.57e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian6g01126 WRKY 4.4e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01126 - - gmx:100812252 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01126 6 28796606 28798484 Vian6g01126 6 28796606 28798484 ECH
Vian6g01126 6 28796606 28798484 Vian1g00362 1 3228017 3229837 PCT