Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01124 ATGTCCTCCTCTCTCATGCCAAACCCAACCGATCGCTCGCGTGACTCTCACCGCCCAAAGAAGAAGAAGAAATCCCCCGCCAAACCCCAACCCCACCAAGACCACTCCCACGCCACATGGAAAACCCACGCGCAGCAGAACCTATATTCCTCCAAGCTCCACCAGGCCCTTGCGCGTGTCAACATCTCCGCCGACACGCCCCGCCGTGGCCGGGCCGTCCGTGAGGCCGCCGACAGAGTCCTCGCCGTCGCCGCCCGCGGGAGGACGCGCTGGAGCCGCGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCAGGAAGACACCGCACAGGCGACCCAAGGTGGTTGGCCCGCCCCGCCCCAAGAAGCCCCGCTTCAGCGTCCTCCGCCTCAAGGGAAAAACCCTTCCCTCCGTTCAGCGCAAAGTTAGAGTCCTCGGCCGGTTGGTTCCCGGTTGCAGAAAAGAACCCCTTCCGATCATTCTCGAAGAAGCCATCGATTACATACCCGCGCTCGAGATGCAGGTTCGCGCCATGGCGGATCTCGCTCGATTACTCCTGGGCTCCTCCTCTTCCTCCGCCGCCGCATCCACCTCCGCGCCGTCGAGTTGA 609 0.6338 MSSSLMPNPTDRSRDSHRPKKKKKSPAKPQPHQDHSHATWKTHAQQNLYSSKLHQALARVNISADTPRRGRAVREAADRVLAVAARGRTRWSRAILTNRLKLKFRKTPHRRPKVVGPPRPKKPRFSVLRLKGKTLPSVQRKVRVLGRLVPGCRKEPLPIILEEAIDYIPALEMQVRAMADLARLLLGSSSSSAAASTSAPSS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01124 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 186 IPR036638 GO:0046983
Vian6g01124 202 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 42 188 IPR044660 GO:0006355
Vian6g01124 202 CDD bHLH_AtIBH1_like 127 178 IPR044549 GO:0006355
Vian6g01124 202 MobiDBLite consensus disorder prediction 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01124 Vian-Chr6 28741081 28741689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01124 37 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 55.367 1.74e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01124 - - gmx:100792237 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01124 6 28741081 28741689 Vian6g01124 6 28741081 28741689 ECH
Vian1g00360 1 3198697 3199299 Vian6g01124 6 28741081 28741689 PCT