Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01121 ATGCCGGAAGAGAATGCAAGGACGGCCTCCTCTGGTTCCGCGACATCGGAAGGTTCGCTGCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGGCCCTTCGGCACCTTCGTCGGAGTCTACGACGGCCACGGCGGCCCCGATTGTTCGCGTTATGTTTGTGATAACTTGTTCCGTAATCTCCAAGTCTTCACAAGAGTCACGAACAGTTGAAAGGTGTGTGCTGGTTCTTATCTGTGTGGGAGATCTTTTGGAGCCATTTGTATGTTGTTATTGTCTTAGGAGTGGTGTTTGTGCTGCAGCGATATTGGCCGAGTCACATAGTGTTGTGACTTCTGAGGTCATTCAACAGGCGTTCCAGCGGACCGAGGAGGGATTCACGGCGCTTGTTTCAGAGTTGTGGAGCTCCCGGCCGCAAATTGCAACCACTGGAACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGCTGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGCAACACTGGTGGGATGGCTGCAATTCAGCTGTCCACCGAGCACAACGCGAATATTGAGGCTATTAGGCAGGAGCTTAAGGAATTGCACCCGGATGACCCCCAGATTGTTGTCCTGAGACATGGAGTGTGGAGAGTCAAGGGCATAATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCGAAATTCAGACTCCCCGAACCAATGAACATGCCTTTCTTGTCTGCTAATCCAACTGTTATTTCTCATCCAATCCAACCAAATGATTCCTTCCTTATATTTGCGTCGGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGTGCCAAGAGACTTATCAAGGCTGCCCTACAAGAAGCGGCAAGAAAACGTGAAATGCGATATTCAGACCTTTATAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTCATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATTCGCCACTCACAGTTCGAAGTGCACTCGATCACTGA 1158 0.4948 MPEENARTASSGSATSEGSLPAISPWPSSRPTRSSRTRARSSPGPSAPSSESTTATAAPIVRVMFVITCSVISKSSQESRTVERCVLVLICVGDLLEPFVCCYCLRSGVCAAAILAESHSVVTSEVIQQAFQRTEEGFTALVSELWSSRPQIATTGTCCLVGVICRQTLFVASLGDSRAVLGRRVGNTGGMAAIQLSTEHNANIEAIRQELKELHPDDPQIVVLRHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPFLSANPTVISHPIQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLIKAALQEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNSPLTVRSALDH 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01121 385 ProSiteProfiles PPM-type phosphatase domain profile. 68 362 IPR001932 -
Vian6g01121 385 SUPERFAMILY PP2C-like 116 363 IPR036457 -
Vian6g01121 385 MobiDBLite consensus disorder prediction 1 54 - -
Vian6g01121 385 CDD PP2Cc 124 362 IPR001932 -
Vian6g01121 385 PANTHER PROTEIN PHOSPHATASE 88 360 IPR015655 GO:0004722|GO:0006470
Vian6g01121 385 Pfam Protein phosphatase 2C 135 331 IPR001932 -
Vian6g01121 385 SMART PP2C_4 51 360 IPR001932 -
Vian6g01121 385 Gene3D - 108 370 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01121 Vian-Chr6 28714960 28722207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01121 111 376 PP2C-type Phosphatase Gene Family AT5G66080 59.774 5.27e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01121 K01102 - gmx:100814799 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01121 6 28714960 28722207 Vian6g01121 6 28714960 28722207 ECH
Vian1g00356 1 3160224 3163574 Vian6g01121 6 28714960 28722207 PCT