Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01118 ATGCCTAATTTTCCTTCATCTTCTTCTTTTCTTCTTTCATCATTCATGGTGGCCATTCTCATTTCTTGCATCTCACATTCTGCCCTTGCTGGTAATCATGGAAAAATAATCGCTGACTCTCCTATGTTGACGCACAAGTTGGGAATTAATCGTACCATTAAAGTAGACATCAGTGGCCAGGGGGACTTCACAAGTATCCAAGATGCCATAGATTCCATTCCTGAAGAAAATTCTCAGTGGGTAATCGTTCATGTCAGGAAAGGACTATACAGAGAAAAGGTGCGCATACATAATAGGCCTTATATATTCCTGAGAGGGAATGGGCGAGGAAGAACTTCCATAACTTGGTCTCAGAGCTCTACAGACAACGTGGCTTCTGCCACCTTCAGAGCCGAATCACATGACGTCATTGTCTTTGGAATTAGCTTCCAGAATGAGGCACCTACGGGGATTGCTTATACCTCGCAAAACCAATCGGTGGCAGTATATGTGGCAGCAGACAAAGTGGCATTTTATCATTGTTCATTTTACAGTACTCATAACACTCTGTTTGATCAAAGAGGAAGACACTACTATGCTAATTGCTACATTCAAGGCATGCATGCTTTTGTTAACGTTGGTTATGGAGTGAACGGTGCACTGAATAAAAGGATTTTGGCGCAGAACCCTGAAATATTCGTGATAGATGATAAAAGGTTAAAGGTGCAAGGTTCAATCACGGCTCATAATAGGGAAAATGCAGATGAGCTGAATGGATATATCTTCATCAAAGGCAGGGTTTATGGCACTGGTTTAGTTTACCTAGGAAGGGCGAAGGGTTCTTATTCTAGGGTGATTTTTGCTGAGACATATCTGTCAAAGACCATTGTCGCTCCGGGGTGGACCAATTGGAGCCATGATGGTAGCACAGAAAATATAGTGCATGCGGAGTACAATACCCGTGGACCTGGTTCTGTGAAGGATGGACGTGCTCCTTGGTCGCTGCAGCTAACTAAGCAAGAAGTTGAGCCCTTTTTATCCATTGATTATATTGATGGCAAAAATTGGTTGCCAGTATGGTTGTAA 1065 0.4272 MPNFPSSSSFLLSSFMVAILISCISHSALAGNHGKIIADSPMLTHKLGINRTIKVDISGQGDFTSIQDAIDSIPEENSQWVIVHVRKGLYREKVRIHNRPYIFLRGNGRGRTSITWSQSSTDNVASATFRAESHDVIVFGISFQNEAPTGIAYTSQNQSVAVYVAADKVAFYHCSFYSTHNTLFDQRGRHYYANCYIQGMHAFVNVGYGVNGALNKRILAQNPEIFVIDDKRLKVQGSITAHNRENADELNGYIFIKGRVYGTGLVYLGRAKGSYSRVIFAETYLSKTIVAPGWTNWSHDGSTENIVHAEYNTRGPGSVKDGRAPWSLQLTKQEVEPFLSIDYIDGKNWLPVWL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01118 354 SUPERFAMILY Pectin lyase-like 49 352 IPR011050 -
Vian6g01118 354 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 50 350 - -
Vian6g01118 354 Gene3D - 47 353 IPR012334 -
Vian6g01118 354 FunFam Pectinesterase 48 354 - -
Vian6g01118 354 Pfam Pectinesterase 55 346 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01118 Vian-Chr6 28698552 28700019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01118 50 350 Carbohydrate Esterase AT5G47500 33.758 4.28e-57 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01118 - - gmx:100792967 493.426