Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01115 ATGGGAACCCCAGAAGAAGAAGATGAAGAAAAGCTTCTCAGAAAGATAGAACGGCTAGAAGCGGGTCACGCACACCTCAAGCAAGAAATGTCCAATTTCCAGCTCCTCCAAAACCACAGGTCTCATTCCAGGTTTGGTGCTGCTACGTCTAACCAACCCTCTTCTTCTTCTCTGCATCAAAATGGAAACAAGTATCTCAATATCTTGCAGTCAATGGGCCACTCTGTTCATGTTTTGGATCTTCAATGTCGCGTCATGTACTGGAACCCTAGTGCTGAGAATCTGTATGGTTATGCAGCAGAAGAGGTTCTTGGGCGGGATGGGATTGAGATGCTTGTGGATCCCAGGGATTTTGGTTTGGCCAATGATGTGTTCAACCATGTCAAAATGGGAGAGAGTTGGAGAGGGCAGTTCCCTGTTAAGAATAAGAAAGGCGATAGGTTCTATGCTGTGTCAACCAATACACCTTTCTATGATGAAGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCTGTGATTCACGGCCCTTTCTTGAATCCAGAATTCCCTTTCTAGGAGCAGAGAGTGCAGAACCTGTATCGAGTTCCAATGGTCGTAGGAGTAGCATTTCAGATAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTGCTCTGGCTTCGAAAATTTCAAATTTGGCTTCAAAGGTGAGTAACAAAGTTAAGTCTAGAATGAGGACAGGAGAATTTAGTGTCAATCGTGAAGGTGGGAGCGGAGAAAGTCGTCATTCTGAGCATAGTTTGTCGGACTCTGCTGTTTCTGACCAGAGAGAAGATGGTAATTCCAGTGGAGCTAGCACTCCCAGAGGAGATGTGCTAAAATCTCCTTTTGGTTTATTTTCTCATGCTGAAGAGAAATCCCAAGGGAAAACCATGAGGGACTCCAATGATCAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCTAAGGCTGAAACATGGATCCAAAAGAAAACATTGTCATGGCCTTGGAAGGCAAACGATCAGGAAGGATCTGAGGCAAGGAATGTTCAAGCTGCTTCACCTTGGTTGCAGGCTGACCAAGAGAATGAGTTGATTAATCAGAAGAATCTGTCTTCTGGGTTGAAGCCAGAAAGCCAAGCAGGCGAAAGCAATGGACCTGTTAATAATGAGGCTTCAGGATCCTGGTCCTCGTTTGTTAATGTTAACAGCACAAGTAGTACCAGCAGCTGCGGGAGTGGTAGTAGTTCTGCACCCAATAATAAAGTGGATGTTGACTCCGATTGCTTGGATTATGAAATTTTGTGGGAGGACTTGACAGTTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTTTATCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATATTCAGATGATTTGGTACTGTCCTTCAGACAAGAGGTTTCTGTCATGAAAAGACTTCGCCATCCAAATATTATTCTATTTATGGGGGCTGTGACTTCACCTCAACATTTATGCATCGTGACAGAGTTTCTCCCACGGGGAAGCTTATTTCGTTTGCTTCAGAGAAACACATCCAAACTAGAGCGGAGACGGAGAGTTCATATGGCCGTGGATATTAAAGGATCTCTATCACTTGGATTGAAGCAATGGTGTATGCTTACTCTTTCTATAGGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCGATCATCCATCGAGATTTGAAGTCTTCAAATATTCTAGTTGA 1770 0.439 MGTPEEEDEEKLLRKIERLEAGHAHLKQEMSNFQLLQNHRSHSRFGAATSNQPSSSSLHQNGNKYLNILQSMGHSVHVLDLQCRVMYWNPSAENLYGYAAEEVLGRDGIEMLVDPRDFGLANDVFNHVKMGESWRGQFPVKNKKGDRFYAVSTNTPFYDEDGSLVGVICVSCDSRPFLESRIPFLGAESAEPVSSSNGRRSSISDKLGLDSQQPLQVALASKISNLASKVSNKVKSRMRTGEFSVNREGGSGESRHSEHSLSDSAVSDQREDGNSSGASTPRGDVLKSPFGLFSHAEEKSQGKTMRDSNDQSEGKPIHKIITSKAETWIQKKTLSWPWKANDQEGSEARNVQAASPWLQADQENELINQKNLSSGLKPESQAGESNGPVNNEASGSWSSFVNVNSTSSTSSCGSGSSSAPNNKVDVDSDCLDYEILWEDLTVGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDLVLSFRQEVSVMKRLRHPNIILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKLERRRRVHMAVDIKGSLSLGLKQWCMLTLSIGTRCKLSSSLQPPDHPSRFEVFKYSS 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01115 589 FunFam PAS domain-containing protein tyrosine kinase 433 517 - -
Vian6g01115 589 Pfam PAS fold 65 170 IPR013767 GO:0006355
Vian6g01115 589 MobiDBLite consensus disorder prediction 374 397 - -
Vian6g01115 589 MobiDBLite consensus disorder prediction 267 282 - -
Vian6g01115 589 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 233 545 - -
Vian6g01115 589 SUPERFAMILY Protein kinase-like (PK-like) 427 545 IPR011009 -
Vian6g01115 589 SUPERFAMILY PYP-like sensor domain (PAS domain) 67 170 IPR035965 -
Vian6g01115 589 MobiDBLite consensus disorder prediction 249 266 - -
Vian6g01115 589 NCBIfam PAS domain S-box protein 64 170 IPR000014 -
Vian6g01115 589 CDD PAS 76 173 IPR000014 -
Vian6g01115 589 MobiDBLite consensus disorder prediction 190 208 - -
Vian6g01115 589 Gene3D Phosphorylase Kinase; domain 1 433 517 - -
Vian6g01115 589 Coils Coil 9 29 - -
Vian6g01115 589 MobiDBLite consensus disorder prediction 235 316 - -
Vian6g01115 589 SMART pas_2 63 130 IPR000014 -
Vian6g01115 589 MobiDBLite consensus disorder prediction 189 208 - -
Vian6g01115 589 ProSiteProfiles Protein kinase domain profile. 440 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01115 589 ProSiteProfiles PAS repeat profile. 61 132 IPR000014 -
Vian6g01115 589 MobiDBLite consensus disorder prediction 299 316 - -
Vian6g01115 589 Pfam Protein tyrosine and serine/threonine kinase 440 545 IPR001245 GO:0004672|GO:0006468
Vian6g01115 589 Gene3D PAS domain 74 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01115 Vian-Chr6 28678070 28681255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01115 10 545 MAP Kinase Kinase Kinase AT3G06620 52.862 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vian6g01115 PK_Tyr_Ser-Thr 3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01115 - - gmx:100815858 873.233