Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01107 ATGATTTCCATTCCCACTTCCTCACTTGCTTCATTTAGCCAAAGAGAAGAAATGGTTGACCGTACAAGGAACAAGATTCTTATAAGAGAATATAACGAAGATAAAGATGTTAAAATGGTGAGAAAACTAGAGAGGAACTCTGAGATTGGAGCTAAAAAGGTGGTCTCCATTTTTACCAACATGATGGGTGACCCTTTATCTAGGATTAGGTTTTTCCCTCTTCGTGTAATGCTGGTAGCTGAGCTTCTCGAGAGCAGGGAACTTGTTGGAGTGGTTAGAGGAGTCATTAAGAATGTAGGAACTCTTTCTGGATCACTCTTGAAGATGGGTTACATCCTAGGCCTCAGAGTCTCTCCTTCTTACAGGAGAAAAGGGGTTGCACTAAGACTTATCGCTGCAGTTGAAGAATGGATGGTGAGAAATGGAGCTGAGTATGCATTCCTAGCCACTGAAAAGGATAATGATGCTTCTAAAAACCTATTCACTGTCAAATGCAATTATGTGAACCTTAGCTCACTTGTCGTATTCGTCCAACCAATTAGTTCCATGACAAAGCATATTTCCAGGGATATAAAAATAGAGAAAGTGGACATAGATCTAGCAATTTCGTTATACAGAAGAACCTTGAAAACAAAAGATTTGTATCCACTAGATATGGACGTTATTCTGAAGGAGAAACTCAGCATAGGCACGTGGGTAAGTTATTATAAGAGAGAGGGCTGGCTCAATTTGCGAAGCAAGGTAGATAATGAAGAAGATCTCATTAGCAGTGAAACTTCAAACTCATGGGTGATTTTTAGTATTTGGAACACTTGTGAAGCTTACAAGTTTCAAGTTAGAAGGTCTCAACTAGTAAGGTTTCTTCTTACAACCTTAAATCAGGCAAGAGAGAGAGTTTTCCCTTGTCTCAAGATGTCGGTGAGTAACTCACTTTGTAGATCCTTTGGTTTTCTCTTTCTTTATGGAATCTATGGGCAGGGAGAAAACCTTGGAGAGCTCATGGAATCCATGTGGAGATTCACATCAAGAGTGGGAGAAGGAATGAAGGACTGTAAGGTGTTTATAACTGAGTTAGGGTTTGGTGATCCACTTGCCAACCATGTTCCTCAAACAGATTCCATCTCGTGTATCGATGATCTATGGTACACAAAGAGACTTTCAACCCACGTTGATGAAAACACTGATGAAATATTGATGAGACAAGTGGGAAATGTGTTTGTTGACCCTAGAGATTTTTAG 1239 0.3979 MISIPTSSLASFSQREEMVDRTRNKILIREYNEDKDVKMVRKLERNSEIGAKKVVSIFTNMMGDPLSRIRFFPLRVMLVAELLESRELVGVVRGVIKNVGTLSGSLLKMGYILGLRVSPSYRRKGVALRLIAAVEEWMVRNGAEYAFLATEKDNDASKNLFTVKCNYVNLSSLVVFVQPISSMTKHISRDIKIEKVDIDLAISLYRRTLKTKDLYPLDMDVILKEKLSIGTWVSYYKREGWLNLRSKVDNEEDLISSETSNSWVIFSIWNTCEAYKFQVRRSQLVRFLLTTLNQARERVFPCLKMSVSNSLCRSFGFLFLYGIYGQGENLGELMESMWRFTSRVGEGMKDCKVFITELGFGDPLANHVPQTDSISCIDDLWYTKRLSTHVDENTDEILMRQVGNVFVDPRDF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01107 412 CDD NAT_SF 77 148 - -
Vian6g01107 412 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 22 412 - -
Vian6g01107 412 Gene3D - 28 180 - -
Vian6g01107 412 Pfam Acetyltransferase (GNAT) family 80 166 IPR000182 GO:0016747
Vian6g01107 412 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 21 161 IPR016181 -
Vian6g01107 412 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 26 228 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01107 Vian-Chr6 28550146 28552374 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vian6g01107 Acetyltransf_1 5.4e-14 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01107 - - vra:106754018 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01107 6 28550146 28552374 Vian6g01107 6 28550146 28552374 ECH
Vian1g00344 1 3067607 3069189 Vian6g01107 6 28550146 28552374 PCT