Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01100 ATGGAAGACTTGTACCATGTTTGTTTTAGTACAGTGGATGAAAATTCTAGTTCATCCAATGATATTTTCTGGGGCAGTGAGGAACATAATGAAATAAAGAAGTTACACTTTTCTGGAGCAGAAAATCATGGAGTTTATGGGGGAGTAGACTCCTTTTACTCTAATTTCGAGTTTTCCACAGATTATCCATCAGGATACCTTATATCCTCTAATCAAGAAAAGTATCACCAGCAACAATCATACCATGATTATGGCGATTTGGATGATAACCTTCAGTTTGACATGGTGTCTCCACCACTCCAATTTGATGCACAATATCCAACCAGTGGTACAACAGAGGATAAGCCACACTCAACTTTCCCTTTAGCCTCACTTGAGATCTTGAAGAACTATGGCAAGGGCTTCAAGAGGTTTTCCTATGAAGGCAAATCCCTGCAGCCAGTGGTTGATTCTGTGGCCACAGATGAATTTGGTTTTAGAAAGCTCTCAACTGAAGATATCATGAGGATAGCAGGAACAAGGTTCATCAAATCATCATCTTCAGAGTCAGAACCTTTGACTTTCTTGGAAACTCACCCTTATGGGTTTTCCTTCTCTGGATTCTCTGATGAGGAGAAAGAGGATGTGGCACTGTCTGAGTCCCTCTTGGCTTGTGCTGAGAAAGTTGGTCATCAACAATTTGAACGTGCAAGGAAGTTGCTAAGTCACTGCCAATCATTGTCAAGCAAAACTGGGAGCCCCGTTAAGAGAATTGTTCATTATTTTGCTGAAGCACTTCTCCACAGGATAGATACAGAAACAGGAAGAGCTTCATCCAAGGATTTGCATAAAGGTCAGTCATTTGATCCTGAAGAGGCAGCCAAGGAACTAAACCCCGCTATTACTGCATTTTATGAAGCGCTTCCCTTTTGTCAGATTTCAGTGTTCACTGCAGTTCAAGCTATAATAGAAGACATAGCTGAAGCAAAGAAGATTCATGTTATTGATCTCGAAATCAGAAAGGGGGGCCAATGGGCTATCCTAATGCAAGCCCTTGAGTCAAGGCATCAATGTCCAGTTGAGCTTCTAAAGATTACCGCTATTGAAAGTGGAACCACTAGACACATTGTTGAGGACACTGGTAAGAGATTGAAGGATTTTGCTCAAGGTTTGAACATACCCTTCTCTTTCAACATCGTTATGGTACCAGACCTGTTACATCTTAAAGAAGATCTTTTTGAGATCGATCCTGGGGAAGCAATTGCTGTTTATTCTCAGTTTGCACTCAGAGCCAAGATTCAACAATCAGACCAGCTTGAAATAATCATGAGAGTGATTAGAACCTTGAATCCTAATGTGATGGTGGTATCTGAAATTGAGGCAAATCACAACTCCACATCTTTTGTAAATCGTTTCATTGAGGCTCTTTTCTTCTTCAGTGCATTCTTTGACTGTCTTGAGGCTTGCATGAAGGGGAATGAGAAGACCCGAATGATTATAGAGTCACTATACTTTAGTCATGGAATCAAAAACATTGTGGCCACAGAAGGAGCAGAAAGAAAGACTAGGAATGTGAAGATTGATGTGTGGAGGGCCTTCTTCTCCCGCTTCGGAATGGTGGAGAAAGAACTGAGCACTTTGTCTTTATACCAAGCAGATTTGGTGAGTAAAAGATTTCCTTGTGGAAGTTCTTGCACGTTTGATAAGAATGGGCAGTGCCTTATTGTTGGGTGGAAAGGAACACCGATTAATTCTGTTTCTGTCTGGAAATTCATTTGA 1758 0.4101 MEDLYHVCFSTVDENSSSSNDIFWGSEEHNEIKKLHFSGAENHGVYGGVDSFYSNFEFSTDYPSGYLISSNQEKYHQQQSYHDYGDLDDNLQFDMVSPPLQFDAQYPTSGTTEDKPHSTFPLASLEILKNYGKGFKRFSYEGKSLQPVVDSVATDEFGFRKLSTEDIMRIAGTRFIKSSSSESEPLTFLETHPYGFSFSGFSDEEKEDVALSESLLACAEKVGHQQFERARKLLSHCQSLSSKTGSPVKRIVHYFAEALLHRIDTETGRASSKDLHKGQSFDPEEAAKELNPAITAFYEALPFCQISVFTAVQAIIEDIAEAKKIHVIDLEIRKGGQWAILMQALESRHQCPVELLKITAIESGTTRHIVEDTGKRLKDFAQGLNIPFSFNIVMVPDLLHLKEDLFEIDPGEAIAVYSQFALRAKIQQSDQLEIIMRVIRTLNPNVMVVSEIEANHNSTSFVNRFIEALFFFSAFFDCLEACMKGNEKTRMIIESLYFSHGIKNIVATEGAERKTRNVKIDVWRAFFSRFGMVEKELSTLSLYQADLVSKRFPCGSSCTFDKNGQCLIVGWKGTPINSVSVWKFI 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01100 585 ProSiteProfiles GRAS family profile. 202 583 IPR005202 -
Vian6g01100 585 Pfam GRAS domain family 212 583 IPR005202 -
Vian6g01100 585 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 181 573 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01100 Vian-Chr6 28451373 28453130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01100 203 584 GRAS Transcription Factor Family AT1G66350 31.070 1.64e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian6g01100 GRAS 3e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01100 - - gmx:100798926 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01100 6 28451373 28453130 Vian6g01100 6 28451373 28453130 ECH