Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01090 ATGGGCACAACTGTCCTTGATCGTACGTCCACAAAAGATCCGTTGATCACAGTAATGAAAAAGATCGGACGGAGCAGAGTTAAAATGTTACTCCCTTACCTGCTTCCACAAAGCAGCAATCACACTCTCACACCCTTGGCGCTTTTCCCTTGTTTCCTTTTGAGCTTTTTCCAGAAACTCTCACAAACATTCAGACCTCCTTTCTGTATTGTTTTTGCAGTGATGGGTGGCAGTGGGGAGAAGAGAGTGAAGGGTTTTCAGGGGAAGAAGGAAGGGTTCCGAGGAGGAGTGCCGAAAGGGTGTTTGGCCATAAAGGTGGGTCAAGGAGAAGACCAACAACGGTTTGTGGTGCCAGTCATGTACTTCAATCACCCACTCTTCATGCAGCTTCTCAAGGAAGCAGAGGAAGAGTACGGCTTCGATCAAAAGGGAACCATAACCATCCCTTGTCACGTCGAGCAGTTCAGGAACGTTCGAGGCATCATCGACAGCGAAAAGTCTCTCCTTCATAACAATCACGTTCGCTGCTTCGGCTTCTGA 540 0.4815 MGTTVLDRTSTKDPLITVMKKIGRSRVKMLLPYLLPQSSNHTLTPLALFPCFLLSFFQKLSQTFRPPFCIVFAVMGGSGEKRVKGFQGKKEGFRGGVPKGCLAIKVGQGEDQQRFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEQFRNVRGIIDSEKSLLHNNHVRCFGF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01090 179 Pfam Auxin responsive protein 65 158 IPR003676 GO:0009733
Vian6g01090 179 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 85 157 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01090 Vian-Chr6 28290056 28290824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01090 97 170 Calmodulin-binding Proteins AT5G20810 47.297 1.60e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01090 K14488 - var:108342322 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01090 6 28290056 28290824 Vian9g00493 9 5257939 5259131 PCT