Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01089 ATGTCACCTTATTCGTCTGTTGATCATCAATCACCAAATATGTCAGATATTTCGGAATATTCTCATTCATCGAATGCAGGCACGAGAAAGAAGAGGAGCATAAACAAAAAAAGGTTCAGCGATGGACAAGTTAAATCACTGGAATCCATGTTTGAGACAGACTCCAGACTGGAACCGGCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGCTAAAGCAGCTTCAGCGAGACTACACCACGCTTCGAGCCAATTATAAGACGTTGGATTCAAGGTTTGATGCTCTCAACAAAGAGTATCAATCAATGTTAACACAGTTGCAGGATCTGAAAAATCGATTACAGAAGCCCCTAGAACAAACTGAGAGTTGTAGTACGCGATACAAAGCAGCAAACAGCATGGAGAGTGAAGCGGGAAATGGAGAAACAGTCAAAAGAGAACAGGAGATAAAGCGGCCTTGTTGGACAGCAGGAAGATCAGAAGGCATTGTTCGTAGTGTTATCTCGGACTGTGACAGCAGCATAAAGGCAAAACAATACTTTGGTGTGGAAGATGAAGCTTCTCTTCTGAACTTTGTCGAGAACACTGATGGTTCTTTGACAACACCACAACATTGGGGTTTGTTGGAATCAGATGATATCATGGGCTGTGATTACCAATGGTGGGACTTCTGGTCCTGA 732 0.4331 MSPYSSVDHQSPNMSDISEYSHSSNAGTRKKRSINKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQLQRDYTTLRANYKTLDSRFDALNKEYQSMLTQLQDLKNRLQKPLEQTESCSTRYKAANSMESEAGNGETVKREQEIKRPCWTAGRSEGIVRSVISDCDSSIKAKQYFGVEDEASLLNFVENTDGSLTTPQHWGLLESDDIMGCDYQWWDFWS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01089 243 PRINTS Lambda-repressor HTH signature 61 70 IPR000047 GO:0003677
Vian6g01089 243 PRINTS Lambda-repressor HTH signature 70 86 IPR000047 GO:0003677
Vian6g01089 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 162 IPR045224 GO:0003700
Vian6g01089 243 Coils Coil 82 130 - -
Vian6g01089 243 Pfam Homeodomain 36 88 IPR001356 GO:0003677
Vian6g01089 243 CDD homeodomain 29 91 IPR001356 GO:0003677
Vian6g01089 243 ProSitePatterns 'Homeobox' domain signature. 65 88 IPR017970 GO:0000981|GO:0006355
Vian6g01089 243 SMART HOX_1 28 94 IPR001356 GO:0003677
Vian6g01089 243 MobiDBLite consensus disorder prediction 1 41 - -
Vian6g01089 243 SUPERFAMILY Homeodomain-like 12 91 IPR009057 -
Vian6g01089 243 Pfam Homeobox associated leucine zipper 90 132 IPR003106 GO:0006355|GO:0043565
Vian6g01089 243 Gene3D - 24 98 - -
Vian6g01089 243 ProSiteProfiles 'Homeobox' domain profile. 30 90 IPR001356 GO:0003677
Vian6g01089 243 MobiDBLite consensus disorder prediction 1 28 - -
Vian6g01089 243 FunFam Homeobox-leucine zipper protein ATHB-7 18 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01089 Vian-Chr6 28278567 28279577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01089 38 243 Homeobox Transcription Factor Family AT3G61890 46.977 5.87e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian6g01089 Homeodomain 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01089 K09338 - gmx:100806279 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01089 6 28278567 28279577 Vian9g00495 9 5303273 5304196 PCT