Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01084 ATGGAGATGGAGAGGTACACCAGTCAGCGGTGGAGACCTACTGACGATCAGGTCAAAATGATGACCCATATCTACAATTACGGGGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTGCATCTCGACTAAGGGCTTTCGCAGATGCCACTGAATACAATGTGCACTGCTGGTTTAACAACCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGGTAGACCCCACTGGCACTCAGTTTTCACAACTGCCGCTATACATGTATGAAAACGACTGGGTGATCATGAGGGCGCCGAGGCTGCTGAACTTGTTCCCGGTTCCGATCATCATTGACGACGACAGGGACGGACGGCAAATCGCTCCACCCATGCTTCTCACATTCCGGACCAGAGCTCCCTCGACGGAGCTCTCCCTCAGACCACCGCAACCAGCTCGGGAATACTTTCGCTAA 450 0.5444 MEMERYTSQRWRPTDDQVKMMTHIYNYGVTHPSRAQVVEIASRLRAFADATEYNVHCWFNNHGNRVRRWQAEVDPTGTQFSQLPLYMYENDWVIMRAPRLLNLFPVPIIIDDDRDGRQIAPPMLLTFRTRAPSTELSLRPPQPAREYFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01084 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
Vian6g01084 149 Gene3D - 8 73 - -
Vian6g01084 149 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian6g01084 149 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 68 IPR044555 GO:0003700|GO:0099402
Vian6g01084 149 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01084 Vian-Chr6 28232674 28233224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01084 7 72 Wox Gene Family AT5G59340 39.394 8.59e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian6g01084 Homeodomain 4.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01084 - K15316 vum:124821070 277.33