Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01074 ATGGCTTTCCATGCTGATGAGGCAAAAACAAGTATGCAACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGAACTTGCTCCGTATTTCCCAACCGACGAGGTTGAGAATTTTGCCGTAGTGCATAGAGTGTTCGGTGCTAGAAACGTTATCAAAATGATTCAGACGGTTGAGGAAGCAAAGAGAGGTGATGCAGTTAAATCCATGGTGTATGAGGCCACAGCAAGGCTTAGAGATCCAGTTTATGGGAGTGCTGGAGTTATTTATGAGTTACAAAAGATGATCGAGGAACTTAAGGCTCAGTTGGATTCGATAAGAACACGGATGTCAGAGATGAGAGAAGAAAAGGAGCAGTTGTTGAGCATTGGTAACAACTACGATCCTATGTTTGATTCTGCTATGACCTCAGATCCATTTGATTTTCCTGTGGAAGGTGGCTGGCTATACAGCAATATCTCAACACCCTCCTAG 492 0.4451 MAFHADEAKTSMQHQPCAACRMLRRRCDSKCELAPYFPTDEVENFAVVHRVFGARNVIKMIQTVEEAKRGDAVKSMVYEATARLRDPVYGSAGVIYELQKMIEELKAQLDSIRTRMSEMREEKEQLLSIGNNYDPMFDSAMTSDPFDFPVEGGWLYSNISTPS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01074 163 Coils Coil 95 129 - -
Vian6g01074 163 Pfam Lateral organ boundaries (LOB) domain 16 112 IPR004883 -
Vian6g01074 163 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Vian6g01074 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01074 Vian-Chr6 28110586 28111360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01074 16 134 AS2 family AT1G07900 53.782 2.82e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian6g01074 LOB 3.3e-38 No_clan