Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01066 ATGAAGGTTGACGCGGGGTCAGGGCGCGTGGCGTGGAACGAGGAGGAGAAGGCCGTTGTTGGGGCTGTTCTGGGTGGTCGCGCTCTGGAGTTCTTAACGACAAACTCGGTGTCGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGACGAAGGACTTCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAACGACTCAAATTTCAGTTGGAACTACGCGATTTTCTGGCAGCTCTCGCAGTCGAAATCCGGTGACTGGGTTCTGGGTTGGGGAGACGGGTGCTGCAGGGAGCCCAACGAGGAAGAGGAGGGTGCGGTGAGAGGAAAGCTGAGGCTTCTTCGCGTGGACGAGGAGATGGAGCAGAGGATGAGGAAGGGGGTGCTGCAGAAGCTGCACACTACTTTTGGAGGATCGGATGAGGACAATTACGCCTTTGGCCTCGACCACGTGACCGACACGGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTCCCTCGCGGGCATGGTGGCCCAGGTAAGTGCTTCGTTTCCGGGAAGCATTTGTGGCTGAAATCTGTGTCCGATTATTGCGTGCGGTCTTCCTTGGTTAAATCTGCCGGAATTCAGACCATCGTTATGATCCCTACTGATTTGGGAGTGGTGGAGCTGGGTTCCGTGAGAGTGTTAGCGGAGAGTTTTGAACTCGTGCAGGCCGTTAAATCTGTGTTCTCCACGCAATGTTCGCCGTACCCTGGGGTGAACGTGAGCGCCAGTGGGAATGCGGTTTATACAGGTTTGGCCATTGGGGATGGTAGTAAGGTAGATGGTGGAGTTCCAATTCCTAAGCTTTTTGCAAACGCAACTGGCAATCGGACCCATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAACAGGCCTTGGGCAGGCCATGCCCTCCCCAATGGGAATAACCTTAACAACAATCCGAATGCAATGAATGGTCTTCATGTTCCGGGTTGGGCAGTGAATTCAGGTGTGAGACAGGCTGGTCCTGTTGAGATTTTTGCTTCTAGGGCATCCACGAGCAGTGTTGTAGCGGAGTTACCTAACGGTGCTAGACAGGATTTTAGGCTTGGCAACGGCTATCAACCTCAAAGGCAGGTGCAAATGCAAATTGACTTTACCGGAGCCACTTCTAGGCCCTCACATGTGAGACCTGTTGTTGGTGATTCAGAGCTTTCTGATGTTGAGGCCTCTTGCAAGGAGGAGCAAGCCAGTGTTTTGGATGAAAGGAAGCCCAGGAAGCGGGGTAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTGAATCATGTGGAAGCCGAGAGACAGAGACGTGAGAAGCTCAACCAACGGTTCTATGCATTGAGATCTGTAGTCCCTAATATCTCCAAGATGGACAAAGCTTCGTTGTTGGGCGATGCCATTGCCTACATCAACGAGCTTCAGGCGAAGGTCAAAATCATGGAGGCTGAAAGAGAGAGATTTGGAAGCACCTCGAAAGATGGATCAGTTTTGGAAGCTAACTCAAGATCTGAAAATAAAAATCAAGAGAAAGAAGCTCCTGATGTGGATATTCAAGCAGCTCAAGATGAGGTAACTGTAAAGGTGAGTTGCCCTTTTGATACTCACCCTGTTTCCAAAGTAATTCAAACACTCAGAGAGGCACAAATCAGTGTTGTAGAATCAAAACTTGCTGCGGTAAATGATACTGTTTTCCACACATTTGTAATTAAGTCCCAAGGATCCGAACAACTTACAAAGGACAAGTTGATTGCTGTTTTTTCCCCACCAGAATCCAACCCATTGCAGCCATTGTTATCAGTTGAATAA 1836 0.4973 MKVDAGSGRVAWNEEEKAVVGAVLGGRALEFLTTNSVSNESVLMAVGSDEGLQNKLSDLVERPNDSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEGAVRGKLRLLRVDEEMEQRMRKGVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFVSGKHLWLKSVSDYCVRSSLVKSAGIQTIVMIPTDLGVVELGSVRVLAESFELVQAVKSVFSTQCSPYPGVNVSASGNAVYTGLAIGDGSKVDGGVPIPKLFANATGNRTHFREKLAVRKMEDNRPWAGHALPNGNNLNNNPNAMNGLHVPGWAVNSGVRQAGPVEIFASRASTSSVVAELPNGARQDFRLGNGYQPQRQVQMQIDFTGATSRPSHVRPVVGDSELSDVEASCKEEQASVLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEAERERFGSTSKDGSVLEANSRSENKNQEKEAPDVDIQAAQDEVTVKVSCPFDTHPVSKVIQTLREAQISVVESKLAAVNDTVFHTFVIKSQGSEQLTKDKLIAVFSPPESNPLQPLLSVE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01066 611 Gene3D - 427 499 IPR036638 GO:0046983
Vian6g01066 611 MobiDBLite consensus disorder prediction 404 445 - -
Vian6g01066 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 437 497 IPR036638 GO:0046983
Vian6g01066 611 SMART finulus 440 489 IPR011598 GO:0046983
Vian6g01066 611 FunFam Transcription factor bHLH13 427 501 - -
Vian6g01066 611 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 237 IPR025610 -
Vian6g01066 611 PANTHER MYC 39 594 IPR045084 GO:0003700|GO:0006355
Vian6g01066 611 MobiDBLite consensus disorder prediction 498 524 - -
Vian6g01066 611 MobiDBLite consensus disorder prediction 385 445 - -
Vian6g01066 611 Coils Coil 480 500 - -
Vian6g01066 611 Pfam Helix-loop-helix DNA-binding domain 438 484 IPR011598 GO:0046983
Vian6g01066 611 CDD bHLH_AtAIB_like 431 496 - -
Vian6g01066 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 434 483 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01066 Vian-Chr6 27988985 27990820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01066 8 605 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.265 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian6g01066 bHLH-MYC_N 5.6e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01066 - - gmx:100801502 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01066 6 27988985 27990820 Vian9g00530 9 5882137 5884008 PCT