LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian6g01064	ATGGAATCAGAAATTCAAAGAAAAATAGAGGAAACAGTGTTGGACATACTGAACAAATCCAACATGGAAGAAGCCACTGAGTTCGGCATACGACTCGCTGTCTCGGAGAGACTCGGTATCGACCTCTCCGACTCCATCAGTAAACACTTGGTTAGAAGCATAGTTGAGTCCTATCTTCTCTCCATTATGGCCAATGGAAAGGCGGAGAAGAAGGAAAATGTAGTCAGTGTCGAGGCCGAGGCCGATGAGGAGACGGAGGTGGTGAAACTGAAGAGGGAAGATCCTGAACGTATTATTTGTCATCTGTCCAACAGGAGGAACGTATCCGTGAAAGCATTCAGAGGGACGTCACTAGTCTCGATTAGGGAGTTCTATATGAAAGATGGAAAACTACTTCCTGGTTGTAAAGGTATTAGTTTACCTTCTGAGCAATGGTCAATCTTCAAGGAGAGTGTTCCTGCAATAGAAGAAGCTATCTTAAAGATGGAAGGAAGGATCAGATCGGAGCTTAATGGTAAGCAACATGAAGATGGGTCAAAACCAGTTGTCGCAGCTGCTCCTCTAGAGCCTGTTGCTCCTCTTGAGCCTGTTGTTCCTGTTTCTCCACTTGAGCCTATAGTCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTTCCATTTCTGGGCTCAGCAGATGAAATCACTATTGAAACAATTAAAGATTGAACATGTACTAATTGAACCATGCCCGAATGCTGCATTAGGGGAAGGTGCAAAGGCTGAAGACATTGCTGCAGCCAAGGCTGCAGAAAGGAGATGGTTGAATGATGATGTAGTGTGTTGCCGCAATATCTTGAGCCATTTATCTGATCCTCTTTTCAACCAGTATGTGAACAGAAAAGTGAGCAGCAAGGAATTATGGGAAGAGCTAAAAATGGTTTATCTGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATAGTTGATGAAAAAACAGTGATTGAGCAAGTCCGAGACCTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGAATATTCATTGACGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCATCCTGGAAGGACTTCTGCATCAGGTTATCGCGTGAGGAATATTTACCTTTCTGGAAGTTAATGGAATGTATACAGGTAGAGGAAGAATTTCGGTGTGGAGTACAACGAGGGGGTGAACATTCTTACAGTATGGGATTTCACCCGGGCAGTAGAGGTGGTGGACAGAGGAGCGTTGACTATAAGCCACTAGGAATCTGGAGGAATAGGCCAGAAATCAATGCCAGGAGCTTATCCTGTAATATATGTGGCAAGAGGGGACATCTTTCAAAAAATTGCTGGAGAAGAAATGGCAGGCAAACTAATGAAAGGAGAGCAGAAGATGATGTCAGCACATCTACCACAGAAGTTGATACTCTGGCTTCTATTCCTACCGAGTAA	1488	0.4308	MESEIQRKIEETVLDILNKSNMEEATEFGIRLAVSERLGIDLSDSISKHLVRSIVESYLLSIMANGKAEKKENVVSVEAEADEETEVVKLKREDPERIICHLSNRRNVSVKAFRGTSLVSIREFYMKDGKLLPGCKGISLPSEQWSIFKESVPAIEEAILKMEGRIRSELNGKQHEDGSKPVVAAAPLEPVAPLEPVVPVSPLEPIVPIEVVRFDGKNFHFWAQQMKSLLKQLKIEHVLIEPCPNAALGEGAKAEDIAAAKAAERRWLNDDVVCCRNILSHLSDPLFNQYVNRKVSSKELWEELKMVYLYEEFGTKRSQVKKYIEFQIVDEKTVIEQVRDLNGIADSIAASGIFIDDNFHVSVIISKLPPSWKDFCIRLSREEYLPFWKLMECIQVEEEFRCGVQRGGEHSYSMGFHPGSRGGGQRSVDYKPLGIWRNRPEINARSLSCNICGKRGHLSKNCWRRNGRQTNERRAEDDVSTSTTEVDTLASIPTE	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian6g01064	495	Coils	Coil	67	87	-	-
	Vian6g01064	495	Pfam	Transcriptional Coactivator p15 (PC4)	100	150	IPR003173	GO:0003677\|GO:0006355
	Vian6g01064	495	PANTHER	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	3	165	IPR045125	GO:0003713\|GO:0060261
	Vian6g01064	495	Pfam	DEK C terminal domain	7	59	IPR014876	-
	Vian6g01064	495	ProSiteProfiles	DEK C-terminal (DEK-C) domain profile.	3	60	IPR014876	-
	Vian6g01064	495	Gene3D	Transcriptional Coactivator Pc4; Chain A	90	167	IPR009044	GO:0003677\|GO:0006355
	Vian6g01064	495	MobiDBLite	consensus disorder prediction	467	481	-	-
	Vian6g01064	495	Pfam	gag-polypeptide of LTR copia-type	269	399	-	-
	Vian6g01064	495	ProSiteProfiles	Zinc finger CCHC-type profile.	449	462	IPR001878	GO:0003676\|GO:0008270
	Vian6g01064	495	SUPERFAMILY	ssDNA-binding transcriptional regulator domain	99	160	IPR009044	GO:0003677\|GO:0006355
	Vian6g01064	495	SUPERFAMILY	Retrovirus zinc finger-like domains	437	468	IPR036875	GO:0003676\|GO:0008270
	Vian6g01064	495	MobiDBLite	consensus disorder prediction	467	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian6g01064	Vian-Chr6	27970291	27973214	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Coactivator p15	Vian6g01064		Retrotran_gag_2	3.7e-12	CL0523

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian6g01064	-		-	var:108341934	914.45