Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01056 ATGAACTTCTTGAAGGTCCTGTTCCACTGCTTCATACCTTTTGCTGTCGCATATGCATCATCTGATTGCCAATATTATTCTTGGTGCAGCGCCAACAACATCCTTATTCGTTTTCCCTTCCAAATAGAAGGTCAGCAACATCCTTATTGTGGCTATCCTGGTTTCAAACTATCTTGTTCCAATGATAGCAAAACAGTTATAACACTTCCTTACATGGGAAAGTTCTTTGTCCGCAACATTAACTACCTCAGACAACAGATGCAAGTGTACGACCCAGATGATTGCCTTCCAAAACGTCTTCTAAGCCTCAACCTTTCAGCTTCTCCCTTCATTGTAACTTCACAACGTAACTACACCCTCTTAAGCTGCCCAACTCGTCACACAGGGTCGCAGTTCATTCCCATTAACTGTCTTAGCAATTCAACGTCTTTTGTTTCAGCTATTCCTTCACTGAACTTCACTTCATTGCCCGAGTCTTGCCATGTTGTAAAGAAACTATCATTTCCAGTTGCATACCAGGAAAATTTCAGTGATGATCTCCTTCGTGGAGATCTTCTATTAACATGGTATTCACCTGACTGTAGATATTGCGAATCACAACAAGCTCTGTGCGGATTTGATGTGAGCATAAACAGTGGTCAAGTTGGTTGTTTCTTTGATGACCAAACGGCACGTCAAGATCATGGTCTTCGAGTTTTTGGAATCATCACATTATCCATCGTTGGACCAGCTATCGTGTGTGCCATTGCAATGACATGCTACGGCACCCTCAAGTACAGAAGAGGCAACACAGCGAGAATTGCTGCAGCACAGAGGTCTGCAGCAACTGAAATACCGGAATCTGGCACCGTTAGGATGGGTCTGGATGAGTCTACAATCGAGTCGTATCAGAAACTGGAGTTAGGGGAGAGCCGAAGAGTGCCAGGACCCAATGAGGGATGTTGCACCATATGTCTGTCAGAGTATAAAACCAAAGACACAATAAGATGCATTCCTGAATGCGCACATTGCTTCCATGCTCACTGCATCGATGAATGGCTTCGCATCAACACTACATGCCCTCTTTGCCGCAACTCTCCCTCTACAGTTCTAGCTATGTCCAGTGATCATTGA 1113 0.442 MNFLKVLFHCFIPFAVAYASSDCQYYSWCSANNILIRFPFQIEGQQHPYCGYPGFKLSCSNDSKTVITLPYMGKFFVRNINYLRQQMQVYDPDDCLPKRLLSLNLSASPFIVTSQRNYTLLSCPTRHTGSQFIPINCLSNSTSFVSAIPSLNFTSLPESCHVVKKLSFPVAYQENFSDDLLRGDLLLTWYSPDCRYCESQQALCGFDVSINSGQVGCFFDDQTARQDHGLRVFGIITLSIVGPAIVCAIAMTCYGTLKYRRGNTARIAAAQRSAATEIPESGTVRMGLDESTIESYQKLELGESRRVPGPNEGCCTICLSEYKTKDTIRCIPECAHCFHAHCIDEWLRINTTCPLCRNSPSTVLAMSSDH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01056 370 Pfam Ring finger domain 315 357 IPR001841 -
Vian6g01056 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 361 IPR046948 -
Vian6g01056 370 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Vian6g01056 370 CDD RING-H2_EL5-like 314 357 - -
Vian6g01056 370 SMART ring_2 315 356 IPR001841 -
Vian6g01056 370 SUPERFAMILY RING/U-box 314 360 - -
Vian6g01056 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 362 IPR013083 -
Vian6g01056 370 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
Vian6g01056 370 Pfam Wall-associated receptor kinase C-terminal 174 222 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01056 Vian-Chr6 27896457 27898753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01056 29 361 C3H Transcription Factor Family AT2G25410 42.105 1.08e-87 268